Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00839 ATGCCCGTGACCAAAGAGCTCCTCTTGGGTCTTCTTCATTGTGGTCCTTGCTTGAATTCCATGTTATACGTGAAGCACCATTCATGCACCCAAGGAAGCTTACGTGAAGCTCTCATGCATGCAAAGCCCATGGAGTTATTTCTCGGAGGTAGGGAAAGAGATCAACTCATCTACCAAGAGATGAAGATGTTCTCTAGTCTTCTCTCACCAAAAGAAGGGACTATGAAAGATGTCAGGATGCAACGAGACAAAGGCTCCGAGTTTGTGCAATGCAGTACCCATGTTGAAGCTGCTCTTGCTACGTATGGGAGATGCTCGGATTCTGCATGGCCAAACTATCAACATGGGGACATTGACTTGACAGCATTAGGTAGGGATCAAACTCCGAAGGATGCATGGGCTCATCAGGTTCGTGGCATGCTTGAGAAGGAGGAAACAATGAAAATTTTAGTGTGTCAGAATGTTGCATGCAAAGCTACATGGAATCCAGAAGATTATTTTTGCAAGAGGTGTTCTTGTTGTATATGTAATTATTATGGTGATCACAAGGACCCGAGTTGGTGGTTGACCTACGGCTCTGATAATCCCAGTGAGGAGTCATGTGGAATGTCATGCCATTTACAATGTGCTTTGAGTAGTCAAACGTCTGGCATTTCGTAG 660 0.4485 MPVTKELLLGLLHCGPCLNSMLYVKHHSCTQGSLREALMHAKPMELFLGGRERDQLIYQEMKMFSSLLSPKEGTMKDVRMQRDKGSEFVQCSTHVEAALATYGRCSDSAWPNYQHGDIDLTALGRDQTPKDAWAHQVRGMLEKEETMKILVCQNVACKATWNPEDYFCKRCSCCICNYYGDHKDPSWWLTYGSDNPSEESCGMSCHLQCALSSQTSGIS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00839 219 PANTHER VIN3-LIKE PROTEIN 2-RELATED 141 218 IPR044514 GO:0010048|GO:0040029
Rops8g00839 219 Pfam PHD - plant homeodomain finger protein 152 218 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00839 Rops-Chr8 18091566 18092904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00839 150 218 PHD Gene Family AT2G18880 57.143 1.68e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00839 - - gmx:100785502 131.339