Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00830 ATGCCAAATTGTAGCCTTGACAGGCATCTATATCCAAGCCATGAGTTAAGCCAGAGGTTGGATGTGGTTCAGTTAGTGAGAATATGCAGTGATGTGGCTGAGGGAATGTCCTATCTGCACCATTACTCTCCTGTGAAAGTAGTGCATTGTGATCTTAAGCCGAGCAATATACTCCTTGATGATGATCTGACAGCTTTGGTTACTGATTTTGGAATTGCAAGGCTTCTAAAAGGTGATGAGAGTCTGTTCTCCAGTAACTCAGCATCTTTCAGTTCAACACAAGGCTTGCTGTGTGGCTCCGTTGGCTATATAGCTCCCGAATATGGAATGGGAAAACATGCTTCAACTGAGGGTGATGTTTACAGTTTTGGTGTAATTACATTAGAAATGGTGACAGGAAGACGCCCCACAGATGTCCTCACCCATGAAGGACCATGCCATCTGAGAGCCTTATATGAAAACAATGGATCAAACTTGACCAATGGTTTCAAGACAGAGAGAGGAGATGGGTGCCCTTTGAGAATCGGCATCATCCACACCTTCACATTGCGTGGGGACCTTCATGGAACCGGGTCAGGTTTGGACCGTGATTTGGGTCCGAATTCGAGTGATGGGGCTGGTTTGAAGGGGAAAGGAATGTGA 642 0.4579 MPNCSLDRHLYPSHELSQRLDVVQLVRICSDVAEGMSYLHHYSPVKVVHCDLKPSNILLDDDLTALVTDFGIARLLKGDESLFSSNSASFSSTQGLLCGSVGYIAPEYGMGKHASTEGDVYSFGVITLEMVTGRRPTDVLTHEGPCHLRALYENNGSNLTNGFKTERGDGCPLRIGIIHTFTLRGDLHGTGSGLDRDLGPNSSDGAGLKGKGM* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00830 213 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 149 - -
Rops8g00830 213 Gene3D Transferase(Phosphotransferase) domain 1 1 168 - -
Rops8g00830 213 SMART serkin_6 1 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00830 213 SUPERFAMILY Protein kinase-like (PK-like) 1 142 IPR011009 -
Rops8g00830 213 MobiDBLite consensus disorder prediction 192 213 - -
Rops8g00830 213 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00830 213 Pfam Protein kinase domain 20 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00830 213 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Rops8g00830 213 FunFam Os07g0541700 protein 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00830 Rops-Chr8 17823347 17829519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00830 1 140 Receptor kinase-like Gene Family AT3G47090 51.370 3.73e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops8g00830 Pkinase 3.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00830 - - lja:Lj4g3v2002960.1 263.462