Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00808 ATGGAACTTTCCAGCCAAGAAGGAGAAATCCCAATCCCAATAAACAGTACTTATGGTGGGGGACATGGGAATGTTCATGGACAGGGACATGGTCACATGATTCATGATGACCCTCCTCCACACCATAACCACATTATATCTTCCTCAACACCCCAAAACCCTTCAAATGGCTCTTCAATGCAAGCAGGCCTAGAGGATCATAGACATGGACCCTATAAGAAAGTGGTGAGGTACAGAGAATGCCTAAAGAACCATGCAGCTGCTATGGGAGGAAATGCCACTGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAAGAAGGGACCATAGAGGCACTTAACTGCTTAGCCTGCCATTGTCACAGAAACTTCCACAGAAAAGAAGATGAAGGTGAACCCTCCCCATGTGACTACCACCATACTAGCTCACATTTCATGAGTTTTAAATGTTCATTTCAGCAAACTCGTGAATTATAG 474 0.4494 MELSSQEGEIPIPINSTYGGGHGNVHGQGHGHMIHDDPPPHHNHIISSSTPQNPSNGSSMQAGLEDHRHGPYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCLACHCHRNFHRKEDEGEPSPCDYHHTSSHFMSFKCSFQQTREL* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00808 157 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 127 IPR006456 -
Rops8g00808 157 MobiDBLite consensus disorder prediction 43 62 - -
Rops8g00808 157 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 77 127 IPR006456 -
Rops8g00808 157 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 52 138 - -
Rops8g00808 157 MobiDBLite consensus disorder prediction 1 67 - -
Rops8g00808 157 Pfam ZF-HD protein dimerisation region 76 128 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00808 Rops-Chr8 16835270 16835743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00808 1 131 ZF-HD Transcription Factor Family AT1G14440 48.951 2.48e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops8g00808 ZF-HD_dimer 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00808 - - qsu:112015870 214.927