Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00786 ATGGCTTCCATTTCCACCACCATGGATTCAGATTTTGCATACTTGGAAAATATTCAACAATACCTACTTCATGATGATTTAAGCATTCTCACATCACAAGAAGTTGTTCCAAGCCCTAACAGTGACAACAATTTAGATATAGATGCGAAACCTACCATTACCAAAGCAGCGCGTGAAGTGAACGCGCCTCCAACATGGAAGCGCTACCGGGGTGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGAGATCCTAAGAAAAATGGTGCTAGGGTTTGGCTTGGAACTTATGTGACTGAAGAAGAAGCAGCTATGGCTTATGACAAAGCTGCTTTCAAGATGCGTGGAAGAAAAGCAAAGCTGAATTTTCCACACCTCATTGGGTTGCCGGAGCCAGTAAGTGAGACGGTGGCTTCTTCGAAGCGGTGCTCACCGGAACCTTCTTCTTCATCGGAGGATAGTTGTGAGTCACAAGGGTTAAAGAGGAGAAAGAAGAACATGGTTGATTTATTGAATAAGTTAGCTAAGAATAGAAGCCAAGCTAATGTTGATGAGCAATGGGTGAGTGATTTGAATGATTATAGTCTAATCAGGTGCTCCTAG 609 0.445 MASISTTMDSDFAYLENIQQYLLHDDLSILTSQEVVPSPNSDNNLDIDAKPTITKAAREVNAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAAMAYDKAAFKMRGRKAKLNFPHLIGLPEPVSETVASSKRCSPEPSSSSEDSCESQGLKRRKKNMVDLLNKLAKNRSQANVDEQWVSDLNDYSLIRCS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00786 202 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Rops8g00786 202 MobiDBLite consensus disorder prediction 141 164 - -
Rops8g00786 202 CDD AP2 67 128 IPR001471 GO:0003700|GO:0006355
Rops8g00786 202 FunFam Ethylene-responsive transcription factor 2 67 127 - -
Rops8g00786 202 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
Rops8g00786 202 Gene3D AP2/ERF domain 67 127 IPR036955 GO:0003700|GO:0006355
Rops8g00786 202 PRINTS Ethylene responsive element binding protein signature 108 128 IPR001471 GO:0003700|GO:0006355
Rops8g00786 202 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Rops8g00786 202 PANTHER DNA-BINDING DOMAIN 51 175 IPR044808 GO:0003700|GO:0009873
Rops8g00786 202 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Rops8g00786 202 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
Rops8g00786 202 MobiDBLite consensus disorder prediction 141 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00786 Rops-Chr8 16208725 16209333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00786 51 160 AP2-EREBP Transcription Factor Family AT2G44840 58.871 2.75e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g00786 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00786 K09286 - gmx:102663872 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00591 4 15958424 15959017 Rops8g00786 8 16208725 16209333 PCT