Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00772 ATGAACTTCAAATTATCAGTCCAAAAGCAAAAGATAGTGGCAAAAAAAGGGTCATGGTTTCCCTTTGAATTATCTCTGTCTTTCTCAAACCCCCCATTCAACCAGCTTAATTTTTCAGTCCTTTTTCTTTCGAGGGTTTCATTGCAAATTCTCTTAAATGCATCTGATTTGTGTTTTCAACCTCCAACAAAAGACCACATACCCTTAGCTCACAGGTGTAGGTATCGATTTTGCTGTGATTTTATTGAAATGAGTCGTAGAGTGAGAAGGAAAGTGGCAAGGAAAGGCAAAGGGAATGCAGTCTTGTCATGTTTCCCTGAAACTCAAGAAGATGTTTTGGATTTAGAACACCAAGGAATTGTTGATTGGAGGTGCTTACCTGATGATACAGTGATTCAGCTGTTGTCATGTTTGAGTTATAGAGACCGAGCTAGCTTATCAGCAACTTGTAGGACATGGAGGTTACTTGGTAGTTCGCCGTGTTTGTGGACTTCGTTGGATCTTCGTTCCCACAGGTTTGATGCTGGCATGGCATCTTCACTTGCTCCTAGATGTGTGCATCTTCAGAAGCTTAGGTTTCGTGGGGCGGAGTCGGCTGATGCAATCATTCATCTTCGAGCTAGGAACTTGCGCGAATTAAGTGGTGATTATTGCAGGAAGATTACTGATGCAACTCTTGCGGTGATTGCGGCTCGGCATGAGTTACTTGAGAGTCTTCAGCTTGGACCAGATTTCTGTGAGAGAATCAGTAGTGATGCTATTAAAGCAATAGCTCATTGCTGTCCTCGATTGAATAAACTTAGACTCTCGGGCATTAGGGATGTTAATGCTGATGCAATAAATGCCTTGGCTAAGCATTGCCCGAAGTTGACTGATATTGGGTTCATTGATTGTCTGAATGTTGATGAGCTTGCATTGGGAAATGTGTCATCACTTCGTTTCCTTTCTGCTGCGGGGACGTCAAGTATGAAGTGGGGTGTGGTTTCCCATCTTTGGCATAAGCTTCCTAACCTGATTGGATTAGATGTTTCAAGAACTGATATTGGTCCATCAGCTGTTTCAAGATTGTTATCCTTATCGCAGAATTTGAGGGTTTTGATTGCTTTAAATTGTCCTATCCTTGAAGAAGACACTAGCTTCACTGCTAGTAAATATAAGAACAAGTTATTAATTTCCACTTTTACTGATATTTTTAAAGGACTAGCTTCTTTATTTTTTGATAATACAAAGAAAGGAAAGAATGTGTTTTTGGACTGGAGGACTTCAAAGAATAATGATAAGGACCTTAATGAAATTATACCCTGGCTTGAATGGATGCTATCCCATACACTTCTGCGTTCTGCTGAGAGCCCTCAACAAGGTCTTGATAATTTCTGGGTTGAACAAGGTGGATCGCTCTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAGGAGAGGGCAGCCACAGGTCTTGCAACTTTTGTTGTAATTGATGATGAAAATGCGAGCATACATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGTGGCATACGCCTCCTCCTTGGCCTGGCAAAATCTTGGAGGGAAGGGCTTCAGTCTGAGGCAGCTAAGGCCATTGCAAATTTGTCCGTCAATGCCAATGTAGCCAAAGCTGTTGCAGAAGAGGGCGGGATTGAGATTCTTGCTGGTCTGGCCAGGTCAATGAACAAGCTGGTGGCTGAAGAGGCTGCTGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCCATTGCTGAAGCTGGTGGAATAAAAGCTTTGGTGGATCTTATATTCAAATGGTCCTCTAGCGGAGATGGAGTTTTAGAACGTGCAGCTGGTGCATTAGCTAATTTGGCTGCTGATGACAAGTGTAGTACAGAGGTTGCTCTGGCTGGAGGTGTACATGCTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCCAATTTAGCTGCTCATGGAGATAGCAACAGTAACAATGCTGCTGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTTACCCGTTCTCCCCATGAGGGTGTCAGGCAAGAAGCTGCTGGGGCACTTTGGAATTTGTCATTTGATGATAGAAATCGAGAGGCCATTGCAGCAGCTGGTGGAGTTCAGGCCTTGGTTGCTCTTGCCCAATCTTGTTCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGTGCTCTCTGGGGATTGTCAGTTTCTGAAACCAATAGCATTGCCATTGGACGAGAAGGAGGTGTTGCACCTCTGATTGCACTGGCACGGTCTGAAGCAGAGGATGTTCATGAAACTGCTGCAGGAGCACTATGGAATCTTGCTTTCAACCCTGGTAATGCTCTGCGAATAGTGGAGGAAGGTGGAGTATCTGCACTTGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGATTTATGGCTGCATTGGCATTGGCTTACATGTTTGATGGGAGGTAA 2526 0.4434 MNFKLSVQKQKIVAKKGSWFPFELSLSFSNPPFNQLNFSVLFLSRVSLQILLNASDLCFQPPTKDHIPLAHRCRYRFCCDFIEMSRRVRRKVARKGKGNAVLSCFPETQEDVLDLEHQGIVDWRCLPDDTVIQLLSCLSYRDRASLSATCRTWRLLGSSPCLWTSLDLRSHRFDAGMASSLAPRCVHLQKLRFRGAESADAIIHLRARNLRELSGDYCRKITDATLAVIAARHELLESLQLGPDFCERISSDAIKAIAHCCPRLNKLRLSGIRDVNADAINALAKHCPKLTDIGFIDCLNVDELALGNVSSLRFLSAAGTSSMKWGVVSHLWHKLPNLIGLDVSRTDIGPSAVSRLLSLSQNLRVLIALNCPILEEDTSFTASKYKNKLLISTFTDIFKGLASLFFDNTKKGKNVFLDWRTSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDNFWVEQGGSLLLSLMQSSQEDVQERAATGLATFVVIDDENASIHCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIKALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASPGLQERAAGALWGLSVSETNSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGR* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00772 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 768 810 IPR000225 GO:0005515
Rops8g00772 841 FunFam Protein ARABIDILLO 2 438 585 - -
Rops8g00772 841 Pfam F-box-like 123 169 IPR001810 GO:0005515
Rops8g00772 841 SUPERFAMILY RNI-like 147 376 - -
Rops8g00772 841 Gene3D - 673 763 IPR011989 -
Rops8g00772 841 SMART arm_5 626 667 IPR000225 GO:0005515
Rops8g00772 841 SMART arm_5 757 797 IPR000225 GO:0005515
Rops8g00772 841 SMART arm_5 582 625 IPR000225 GO:0005515
Rops8g00772 841 SMART arm_5 501 540 IPR000225 GO:0005515
Rops8g00772 841 SMART arm_5 672 712 IPR000225 GO:0005515
Rops8g00772 841 SMART arm_5 541 581 IPR000225 GO:0005515
Rops8g00772 841 SMART arm_5 798 839 IPR000225 GO:0005515
Rops8g00772 841 SMART arm_5 713 756 IPR000225 GO:0005515
Rops8g00772 841 Gene3D - 456 607 IPR011989 -
Rops8g00772 841 Gene3D - 608 672 IPR011989 -
Rops8g00772 841 SMART LRR_CC_2 207 232 IPR006553 -
Rops8g00772 841 SMART LRR_CC_2 287 312 IPR006553 -
Rops8g00772 841 SMART LRR_CC_2 261 286 IPR006553 -
Rops8g00772 841 Gene3D Ribonuclease Inhibitor 116 393 IPR032675 -
Rops8g00772 841 Pfam Armadillo/beta-catenin-like repeat 505 539 IPR000225 GO:0005515
Rops8g00772 841 Pfam Armadillo/beta-catenin-like repeat 546 580 IPR000225 GO:0005515
Rops8g00772 841 Pfam Armadillo/beta-catenin-like repeat 583 625 IPR000225 GO:0005515
Rops8g00772 841 Pfam Armadillo/beta-catenin-like repeat 760 796 IPR000225 GO:0005515
Rops8g00772 841 Pfam Armadillo/beta-catenin-like repeat 636 667 IPR000225 GO:0005515
Rops8g00772 841 Pfam Armadillo/beta-catenin-like repeat 675 711 IPR000225 GO:0005515
Rops8g00772 841 Pfam Armadillo/beta-catenin-like repeat 713 755 IPR000225 GO:0005515
Rops8g00772 841 PANTHER PROTEIN ARABIDILLO 1 84 841 - -
Rops8g00772 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 552 594 IPR000225 GO:0005515
Rops8g00772 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 593 638 IPR000225 GO:0005515
Rops8g00772 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 683 725 IPR000225 GO:0005515
Rops8g00772 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 511 553 IPR000225 GO:0005515
Rops8g00772 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 637 668 IPR000225 GO:0005515
Rops8g00772 841 Gene3D - 764 839 IPR011989 -
Rops8g00772 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 769 IPR000225 GO:0005515
Rops8g00772 841 SMART fbox_2 126 166 IPR001810 GO:0005515
Rops8g00772 841 SUPERFAMILY ARM repeat 443 827 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00772 654 841 U-box Gene Family AT2G23140 35.979 4.00e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00772 - - ccaj:109792060 1336.63