Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00746 ATGCACAACAAATCCAGAACTAGTTCAATTGATTATGATGATGATGATGTTGATGAGTTTCAAAGCCTTCAATTATTGGAAGTGAGGAATAATGCAATTCAGGCAGGGAGTTTGGATGTGGGAAAGTCAAAAGGAGAGATGAAGAGGGATGATGCTGAGAAGGAGATTGGATGTTGTGTTAAATTTAGCTTCATTGGGAGGTGCATACCTTCAAGATCAAAGGTTGATAACTCCACAAGTGGCACCACTGCTCAAAGTGTGGAAAAAATATCTGCATCTGAGAAAAGCAAAAAGAAAACAAGTGCTCCTCCAGGGTCCTCTACAAGAACTAGTAATGCAGAAAGTATCCCTTCAACTCCAAGATTCAGTGAGGAGTTGAGGTTTTCTTCACGTTTGAGAAAATTCACATTCAATGACCTTAAGTTGGCAACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGTTTTGGTTGTGTCTTCAAGGGTTGGATTGAGGAGAATGGAACTGCACCTGTGAAACCAGGTACTGGGCTTACTGTCGCAGTCAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCTGAGTTAAACATTCTTGGTGACCTTGTTCATCCGAATCTGGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATGAGTTTATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCCTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCAGCCAAAGGTCTTGCTTTTCTCCATGACGAAGCTCAGAGGCCTGTAATCTATCGTGATTTCAAGACATCTAATATTCTGTTAGATGCGGAATACAATGCCAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTTATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTGCTACTTGAAATGCTCACCGGCCGGCGATCTATTGACAAGAATAGACCAAATGGGGAACACAATCTTGTGGAGTGGGCAAGACCTGTACTTGGAGACCGGAGGATGTTTATCCGAATAATTGATCCTCGCCTTGAAGGTCACTTTTCTGTTAAAGGGGCACAGAAAGCTGCCCAGTTGGCTGCTCAATGTCTTAGCCGTGATCCGAAATCCAGACCTATGATGAGTGAAGTTGTTCAAGCTCTAAAGCCTTTGCAAAACCTCAAGGACATGGCTAGCTCATCATATCACTTCCAGGTTGTGCGAGTAGATCGTACCATGTCCATGCCAAGTTCTAAAAATGGTATGCAAACACAGTTGTCATCTTTATCAAGGAAGGGTCAACCTAGAAGGATCTTGTCAAGTCCAAAAGGTGTACTCAGCAAAGTTGTTAGTCACCACCCTAAGGTTACACAAATTACCCATGGTTTTGGGATGGGTCAAACATTAGGTTGCATTCAAGTAGATCAATCAAATGTGGCTATCAGGGAACATTTTGGAAAATTTAATGATGTCTTGGAACCTGGATGTCACTGCTTGCCTTGGTGTATTGGATTCAATATAGCTGGTGGCCTATCACTTCGTGTGCAGCAACTTGATGTTAAATGTGAAACAAAAACCAAGGATAATGTTTTTGTCAATGTGGTTGCATCTGTGCAATACCGTGCTATGGCAGATAAAGCATCTGATGCCTTCTATAGGCTCACCAACACGAGGGAACAGATCCAATCATATGTTTTTGATGTTATCAGGGCCAGTGTACCAAAGTTGGAGTTGGATGCTGCCTTTGAGCAAAAGAATGAGATAGCAAAGGCTGTTGAAGAAGAGCTTGAAAAGGCCATGTCTACTTATGGGTATGAGATAGTCCAGACCCTCATTGTTGATATAGAGCCTGATGTTAATGTCAAGAGAGCTATGAACGAGATCAATGCAGGTAACCTCTTCTAG 2025 0.4242 MHNKSRTSSIDYDDDDVDEFQSLQLLEVRNNAIQAGSLDVGKSKGEMKRDDAEKEIGCCVKFSFIGRCIPSRSKVDNSTSGTTAQSVEKISASEKSKKKTSAPPGSSTRTSNAESIPSTPRFSEELRFSSRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELNILGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHDEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMFIRIIDPRLEGHFSVKGAQKAAQLAAQCLSRDPKSRPMMSEVVQALKPLQNLKDMASSSYHFQVVRVDRTMSMPSSKNGMQTQLSSLSRKGQPRRILSSPKGVLSKVVSHHPKVTQITHGFGMGQTLGCIQVDQSNVAIREHFGKFNDVLEPGCHCLPWCIGFNIAGGLSLRVQQLDVKCETKTKDNVFVNVVASVQYRAMADKASDAFYRLTNTREQIQSYVFDVIRASVPKLELDAAFEQKNEIAKAVEEELEKAMSTYGYEIVQTLIVDIEPDVNVKRAMNEINAGNLF* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00746 674 CDD SPFH_like_u4 514 670 - -
Rops8g00746 674 SUPERFAMILY Band 7/SPFH domain 551 668 IPR036013 -
Rops8g00746 674 PANTHER OS01G0588500 PROTEIN-RELATED 99 432 - -
Rops8g00746 674 CDD STKc_IRAK 153 431 - -
Rops8g00746 674 SMART PHB_4 509 669 IPR001107 -
Rops8g00746 674 Coils Coil 622 642 - -
Rops8g00746 674 Pfam SPFH domain / Band 7 family 513 669 IPR001107 -
Rops8g00746 674 MobiDBLite consensus disorder prediction 455 477 - -
Rops8g00746 674 SUPERFAMILY Protein kinase-like (PK-like) 121 428 IPR011009 -
Rops8g00746 674 FunFam Hypersensitive-induced response protein 1 545 671 - -
Rops8g00746 674 Gene3D Band 7 domain 549 670 IPR036013 -
Rops8g00746 674 MobiDBLite consensus disorder prediction 97 122 - -
Rops8g00746 674 MobiDBLite consensus disorder prediction 455 475 - -
Rops8g00746 674 MobiDBLite consensus disorder prediction 73 122 - -
Rops8g00746 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Rops8g00746 674 FunFam Probable serine/threonine-protein kinase PBL8 233 447 - -
Rops8g00746 674 ProSitePatterns Protein kinases ATP-binding region signature. 153 185 IPR017441 GO:0005524
Rops8g00746 674 MobiDBLite consensus disorder prediction 73 90 - -
Rops8g00746 674 Gene3D Transferase(Phosphotransferase) domain 1 233 451 - -
Rops8g00746 674 Gene3D Phosphorylase Kinase; domain 1 127 232 - -
Rops8g00746 674 Pfam Protein kinase domain 150 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00746 674 ProSiteProfiles Protein kinase domain profile. 147 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00746 674 FunFam Serine/threonine-protein kinase BIK1 114 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00746 Rops-Chr8 15454004 15472051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00746 133 444 Glycoside Hydrolase AT3G07070 55.732 1.14e-114 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops8g00746 Pkinase 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00746 - - gmx:100305393 828.55