Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00742 ATGGGAAAAATAATGGCAGCAAGTAAGGTTACCTTCATCCTGTTGGTAGCTTTTGCCATTACTATTCCATGCCTTGAGGCTGGAATTGCTGAGTTTGACGATTTTCTCAAAGAGCAAGCTAATGAGGCCCATGAAATTGCTCTTCAATCCTACGTGCCCGACCCCATGAACGTTACATCCGAGCTCAATCTACACGTTCACTTGGCAATGGAGGAAGTATCAAACAACACAAGGAGGGAACTAAGGCAGAAGAAAAAAGGTGGAAAATGCTTAGCCAGCAACCCAATAGACCGTTGCTGGAGGTGTAAGAAAAACTGGGCCAATGACCGTCAAAGGTTAGCCAACTGTGTAAAAGGGTTCGGAAGAAGGGCAGTCGGAGGACTCGGTGGCAAGTTCTACGTCGTCACCGACCCTTCCGACAACGACGTAGCCAACCCTAAAGCTGGAACTCTCAGATACGGTGCCGTTCAGAAGGGACCATTGTGGATCATATTTGCACACAGCATGGTGATTAGATTGAAGCAAGAGTTGTTGGTTTCTTCAGATAAGACCATAGATGGACGTGGAGCCAATGTTCATATTAGTGGTGGTGGTGGCATTACAATGCAGTTTGTGAACAATGTCATCATCCATGGCATTCACATCAAGAAGGTTAAGGCTTTGGATGGTGGTATGATTAGGGACTCTTGGAACCATGTTGGACAAAGAACAAGGAGTGATGGTGATGCCATCTCCATTTTTGGTTCCTCTAACATTTGGATTGATCATATTTCCTTGTCTGATTGTGAGGATGGTCTTGTTGACGTTATTCAAGGCTCTACTGCTATCACCATCTCAAATTGCCACATGACCAAACATAACGACGTGATGCTGTTTGGAGCTAGTGATAAATACTCCGGTGACAAGATTATGCAGATAACAGTGGCATTCAATCATTTTGGTCAGGGACTGATCCAGAGAATGCCAAGATGCAGATGGGGTTTCGTCCATGTTTTGAACAACGACTACACTCACTGGTTGATGTATGCAATTGGTGGGAGCTCAGAACCAACAATTCTTAGCCAGGGCAATCGTTTCATTGCACCAAACAATGATGCTGCAAAGGAGATCACACATAGAGACTACACAACACCAGAAGTGTGGTCTAAGTGGCAATGGACCTCACAGAATGACCTGTTCATGAATGGTGCAAAGTTTGTTCAATCTGGAAAACCTATTTCTAAGCTTCCATTCAACAAAGGCTTCATAATGAAACCAAGAGATGGATCTCAAGCCAACAGGCTTACAAGGTTTGCTGGGGCACTCAATTGTAAGGTGGGCAGGCCTTGTTAG 1332 0.4474 MGKIMAASKVTFILLVAFAITIPCLEAGIAEFDDFLKEQANEAHEIALQSYVPDPMNVTSELNLHVHLAMEEVSNNTRRELRQKKKGGKCLASNPIDRCWRCKKNWANDRQRLANCVKGFGRRAVGGLGGKFYVVTDPSDNDVANPKAGTLRYGAVQKGPLWIIFAHSMVIRLKQELLVSSDKTIDGRGANVHISGGGGITMQFVNNVIIHGIHIKKVKALDGGMIRDSWNHVGQRTRSDGDAISIFGSSNIWIDHISLSDCEDGLVDVIQGSTAITISNCHMTKHNDVMLFGASDKYSGDKIMQITVAFNHFGQGLIQRMPRCRWGFVHVLNNDYTHWLMYAIGGSSEPTILSQGNRFIAPNNDAAKEITHRDYTTPEVWSKWQWTSQNDLFMNGAKFVQSGKPISKLPFNKGFIMKPRDGSQANRLTRFAGALNCKVGRPC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00742 443 SUPERFAMILY Pectin lyase-like 89 437 IPR011050 -
Rops8g00742 443 Pfam Pectate lyase, N terminus 29 81 IPR007524 GO:0030570
Rops8g00742 443 Gene3D - 93 436 IPR012334 -
Rops8g00742 443 SMART amb_all 168 365 IPR002022 -
Rops8g00742 443 Pfam Pectate lyase 174 359 IPR002022 -
Rops8g00742 443 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Rops8g00742 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Rops8g00742 443 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Rops8g00742 443 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Rops8g00742 443 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Rops8g00742 443 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Rops8g00742 443 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Rops8g00742 443 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Rops8g00742 443 PANTHER PECTATE LYASE 18-RELATED 43 441 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00742 Rops-Chr8 15397571 15400412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00742 12 443 Polysaccharide Lyase AT1G14420 55.705 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00742 K01728 - gmx:100780236 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00742 8 15397571 15400412 Rops8g00742 8 15397571 15400412 ECH