Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00741 ATGGCAATGATGATAGAGAATAAAGTAAGCCTTAGAAGGAACCGCATATCCATGGCAGAAGGTGAGCTCCAAGGAGCAAGGTGTGTCAAGAGACGACGAAGAGAGTCTGTTGCTGCAGCAAATACTGGTGATGATAGCCATCAGCAGCAGCTGCCACAACAAGAAGTTGGTGAAAATTCTACAACCAACACCACAAAAAGAAGCTCAAAATTTCGCGGTGTCAGCAGGCATAGATGGACTGGTAGATATGAAGCTCACTTGTGGGACAAGCTCTCTTGGAACATAACACAAAAGAAGAAAGGGAAGCAAGGTGCTTATGATGAAGAAGAATCTGCTGCCAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACTTCAACTTCCACCAATTTTCCGATATCTGATTACGTGAAAGAAATAGAAATCATGCAGACTATGACCAAAGAGGAGTACTTGGCCACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGCGTCTCAAAGTATAGGGGTGTTGCAAGGCACCACCATAATGGTAGATGGGAAGCAAGGATAGGGAGGGTTTTTGGAAACAAATATCTATACCTTGGCACCTACAGTACACAAGAGGAAGCTGCTCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGGATTCATGCTGTAACAAACTTTGATTTGAGTACTTACATAAGATGGTTAAAGCCTGAAAGAGGAAGTACCCCAGAAGCAAAACTTGAATCACAGGCAATACTAGAGTCTCAAACAGTGGCATCCCCATATAACTCTACTCTGATAGAAGAGTCAAAGTCATTAGCACTTGACAACAGTTTTTTCAGTCCAGATTACTTGAATTCCCCTGAAAAGCAAGAAGTATTTGAAAACAAAAACTACCAATTCTCGAGCAACAAGTCATCTTCTCCCACTGCTCTTGGACTTCTTCTCCGCTCTTCATTATTTAGAGAATTAGTTGAAAAGAATTTACATGTATCTGTAGATGAACCTGATGGAGAAGCGACAAAGGAGCAACATCAACAGATAGCTAATGATGATGAACTGGGTGGAATATTCTATGATGGCATTGGAGATATCCCATTTGTCTGTGATCCCAACAAATATAACTTAGAATTGCAAGAAACAGACCTGTATTAA 1155 0.413 MAMMIENKVSLRRNRISMAEGELQGARCVKRRRRESVAAANTGDDSHQQQLPQQEVGENSTTNTTKRSSKFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQGAYDEEESAARAYDLAALKYWGTSTSTNFPISDYVKEIEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIRWLKPERGSTPEAKLESQAILESQTVASPYNSTLIEESKSLALDNSFFSPDYLNSPEKQEVFENKNYQFSSNKSSSPTALGLLLRSSLFRELVEKNLHVSVDEPDGEATKEQHQQIANDDELGGIFYDGIGDIPFVCDPNKYNLELQETDLY* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00741 384 CDD AP2 168 229 IPR001471 GO:0003700|GO:0006355
Rops8g00741 384 Gene3D AP2/ERF domain 69 135 IPR036955 GO:0003700|GO:0006355
Rops8g00741 384 Gene3D AP2/ERF domain 168 229 IPR036955 GO:0003700|GO:0006355
Rops8g00741 384 SUPERFAMILY DNA-binding domain 69 135 IPR016177 GO:0003677
Rops8g00741 384 MobiDBLite consensus disorder prediction 22 73 - -
Rops8g00741 384 Pfam AP2 domain 168 219 IPR001471 GO:0003700|GO:0006355
Rops8g00741 384 Pfam AP2 domain 69 125 IPR001471 GO:0003700|GO:0006355
Rops8g00741 384 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Rops8g00741 384 PRINTS Ethylene responsive element binding protein signature 209 229 IPR001471 GO:0003700|GO:0006355
Rops8g00741 384 ProSiteProfiles AP2/ERF domain profile. 70 133 IPR001471 GO:0003700|GO:0006355
Rops8g00741 384 ProSiteProfiles AP2/ERF domain profile. 169 227 IPR001471 GO:0003700|GO:0006355
Rops8g00741 384 MobiDBLite consensus disorder prediction 41 69 - -
Rops8g00741 384 MobiDBLite consensus disorder prediction 25 40 - -
Rops8g00741 384 CDD AP2 69 135 IPR001471 GO:0003700|GO:0006355
Rops8g00741 384 SMART rav1_2 70 139 IPR001471 GO:0003700|GO:0006355
Rops8g00741 384 SMART rav1_2 169 233 IPR001471 GO:0003700|GO:0006355
Rops8g00741 384 FunFam AP2-like ethylene-responsive transcription factor 168 229 - -
Rops8g00741 384 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 292 - -
Rops8g00741 384 SUPERFAMILY DNA-binding domain 168 229 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00741 Rops-Chr8 15377283 15379475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00741 47 231 AP2-EREBP Transcription Factor Family AT5G57390 63.402 1.58e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops8g00741 AP2 8.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00741 - - gmx:100792612 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00741 8 15377283 15379475 Rops8g00741 8 15377283 15379475 ECH