Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00727 ATGTCAAAAATGTCTAGTCCTAAGATAGAAGAGAAGAGAGTTACTTCTATTTTCAGTGAAGATGATTTTGGTATTCAAGAGATTAGAAAGGAAGATAGACTCAAATCTGCTAAAACTGAGATGGGTGAGGTGAAAGAAGAAAATGAAAGATTGAAGATGATGTTGGAGAGAGTAGAAAAGGACTACCACTCCCTTCAACTCCGTTTCTTTGACATCCTTCAAAAAGAAGTTTCTAAGAAAAGTGTTGCTGATTCATCCACTTCCCATGATGAAAATGAAGAACCTGAGCTTGTGTCACTTTGCCTTGGAAGAAATCCGAGGGAGTCTAAGAAGGAAACTAGAATTGAAAACTCTAACAAAACTAGAGAAAAAGAAGATGTGGAAGTCAACCTTAGTCTTGGATTAGACTCCAAATATCAATTGTCAATGGAGCTGGTGTCTGATTTGAGTCCCATGAATAGCTCAGAAGAACCAAAGGAAGCAGAAGCTGAGGGAATAACAGCAAAGGTGATAAATGTAAATGATGACATTTCAGATCAAATGCCTGCCAAGAGAGCCAGGGTATCTGTGAGGGCTAGATGTGATACTCCTACGATGAATGATGGATGCCAGTGGAGGAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTGCACCAGCATGCCCAGTTAGGAAACAGGTGCAAAGATGTGCCGATGACTTGTCCATCTTAATCACCACATATGAAGGAACTCACAACCACCCACTTCCAGTTTCAGCCACAGCCATGGCTTCCACTACTTCTGCTGCTGCTTCAATGCTGTTGTCAGGTTCTTCAACATCTCAGCCTGCAGGTCACAGCTTTTCATCTTTTGGAAATGCTCCTACAGTACTCAATGGTCTGAGTTTCAGTCAGCAGTTTGATGAATCAAGAGCAAAACAGGTCTTCTTACCACCAAACCATGCCTCACATTTGTTCCCAACAGTAACTCTAGACATGACTTCTGCTTCATCCTCCTCATCATCTCATGTCAATCATTTACCTTCAAGTATAGCTTCAAACCCAAGATTTTCTCCAACTAGTCTCAGCTTTTGTTCCTCAGAACCCAACTTCATACCATCCATTTGGGGCAAAGGATTCCCTAATAAAGGCACAATGCCTATTGACAAAACCCACATGAGGCCAGTTATCCCCCCAAACCATTTCCAAGAACAATTCTATCAAAAGTGCATGACAAACCAAACTCCTTCCAAGGAGGCTTTGGCAGAAACAATAACCAAAGCAATCAGCGCAGACCCAAGTCTTTGTTCAGTAATAGCTGCTGCAGTTTCATCAATAGTGGGACAAGGATCAACTAGTGAGAACCAAGAAGGAAGAGAGAAGATTCTAGGTGCAGGGTTGAACTTGAAACTTGGGGAGCATCCTCAATTGGCTTCATCCAATCCATTGAACCAGAATGGGAAAGGATGTTTTACAGGCTACTTCAAAAGGCTGTCCTCCACAAGTTCTCAGACCAGAAACTTAATGCTTCTCCAACCCCCTTTGCAATTTTCTCTCCCTAAGAGTAGCACAGGCACACCTCCTTCCATTGTTAATCAGATCAACCATTGTGATCCAGACATGAACAGACATCATTAG 1647 0.4202 MSKMSSPKIEEKRVTSIFSEDDFGIQEIRKEDRLKSAKTEMGEVKEENERLKMMLERVEKDYHSLQLRFFDILQKEVSKKSVADSSTSHDENEEPELVSLCLGRNPRESKKETRIENSNKTREKEDVEVNLSLGLDSKYQLSMELVSDLSPMNSSEEPKEAEAEGITAKVINVNDDISDQMPAKRARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDLSILITTYEGTHNHPLPVSATAMASTTSAAASMLLSGSSTSQPAGHSFSSFGNAPTVLNGLSFSQQFDESRAKQVFLPPNHASHLFPTVTLDMTSASSSSSSHVNHLPSSIASNPRFSPTSLSFCSSEPNFIPSIWGKGFPNKGTMPIDKTHMRPVIPPNHFQEQFYQKCMTNQTPSKEALAETITKAISADPSLCSVIAAAVSSIVGQGSTSENQEGREKILGAGLNLKLGEHPQLASSNPLNQNGKGCFTGYFKRLSSTSSQTRNLMLLQPPLQFSLPKSSTGTPPSIVNQINHCDPDMNRHH* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00727 548 Coils Coil 34 68 - -
Rops8g00727 548 SUPERFAMILY WRKY DNA-binding domain 192 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g00727 548 FunFam probable WRKY transcription factor 31 184 261 - -
Rops8g00727 548 ProSiteProfiles WRKY domain profile. 194 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g00727 548 MobiDBLite consensus disorder prediction 105 124 - -
Rops8g00727 548 Gene3D WRKY domain 184 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g00727 548 Coils Coil 110 130 - -
Rops8g00727 548 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 28 459 IPR044810 GO:0003700
Rops8g00727 548 MobiDBLite consensus disorder prediction 82 97 - -
Rops8g00727 548 MobiDBLite consensus disorder prediction 82 124 - -
Rops8g00727 548 SMART WRKY_cls 199 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g00727 548 Pfam WRKY DNA -binding domain 200 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00727 Rops-Chr8 15132148 15134585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00727 41 501 WRKY Transcription Factor Family AT5G15130 42.633 4.21e-91 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops8g00727 WRKY 5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00727 - - gmx:100780402 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00727 8 15132148 15134585 Rops8g00727 8 15132148 15134585 ECH
Rops8g00727 8 15132148 15134585 Rops2g03911 2 71705251 71710109 ECH