Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00709 ATGTCATTTTTAGGCATTGAGAACAAATATGATGAAGTGCATGGAGATGATGATTTATCTGATGATGGATTCCATTCTGGGGAGAAGAAAAAGAGGTTTAATTTGGAACAACTGAAGGCACTTGAAAAGAGCATTGATATGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAACTTGCTAAGGCTTCGGGGTTGCAACCAAGACATATTGCAATATGGTTTCAGAATAGAAGGGCAAGATGGAAAACCAAGCAACTTGAGAAGCAATATGAAGTCCTCAAGAAGCAGTTTGAAGCACTCAAGGCTGACAATGATGCCCTTAAGGCTCAGAACCAGAAACTACACACAGAGTTACAAGCTCTCAAATGTAGGGATTGGTGTGAAGCGGGAACAATCAGCCTTGAGAAAGAAACTGAAGGTTCTTGGAGCAATGGAAGTGATAACAGCTCAGACATTAATTTAGATCTCTCAAGAACATAA 480 0.4062 MSFLGIENKYDEVHGDDDLSDDGFHSGEKKKRFNLEQLKALEKSIDMGNKLEPERKVQLAKASGLQPRHIAIWFQNRRARWKTKQLEKQYEVLKKQFEALKADNDALKAQNQKLHTELQALKCRDWCEAGTISLEKETEGSWSNGSDNSSDINLDLSRT* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00709 159 MobiDBLite consensus disorder prediction 1 27 - -
Rops8g00709 159 Pfam Homeodomain 29 82 IPR001356 GO:0003677
Rops8g00709 159 Gene3D - 22 90 - -
Rops8g00709 159 Pfam Homeobox associated leucine zipper 84 122 IPR003106 GO:0006355|GO:0043565
Rops8g00709 159 MobiDBLite consensus disorder prediction 9 27 - -
Rops8g00709 159 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 18 151 IPR045224 GO:0003700
Rops8g00709 159 MobiDBLite consensus disorder prediction 137 159 - -
Rops8g00709 159 SMART HOX_1 27 88 IPR001356 GO:0003677
Rops8g00709 159 Coils Coil 76 124 - -
Rops8g00709 159 CDD homeodomain 29 85 IPR001356 GO:0003677
Rops8g00709 159 SUPERFAMILY Homeodomain-like 19 86 IPR009057 -
Rops8g00709 159 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
Rops8g00709 159 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00709 Rops-Chr8 14473539 14474922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00709 11 157 Homeobox Transcription Factor Family AT1G69780 63.514 1.48e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops8g00709 Homeodomain 9.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00709 K09338 - gmx:100783460 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00709 8 14473539 14474922 Rops8g00709 8 14473539 14474922 ECH
Rops5g01384 5 28691555 28693996 Rops8g00709 8 14473539 14474922 PCT