Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00701 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGGGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGATATCATATTGGTCACTTATATACAGGAAAATGGTCCTGGCAATTGGAGGGCTGTTCCTACTAAAACAGGGTTGTTAAGATGCAGTAAAAGTTGCAGACTTAGATGGACAAATTACCTGAGGCCAGGAATCAAACGGGGTAACTTCACAGAACAAGAGGAGAAGATGATAATACATCTTCAAGATCTTTTAGGAAACAGGTGGGCTGCAATAGCTTCATACCTTCCACAAAGAACAGATAATGACATAAAGAACCATTGGAACACCCATTTGAAAAAGAAGCTCAAGAAATTGCAAACAGGTTCTGAAGGAAGTTTGGGAGATGAGTTTTCAGCATCTCAAAAGATTCCTAGAGGTCAGTGGGAAAAAAGGCTTCAAACTGATATCCAAATGGCCAAAAGAGCTCTTAGTGAAGCTCTTTCACCAGAGAAACCACCTACTTTATCTGCTTCAAACCCTTCAAATAGTAGCTCCTTATCTTCCACTAAACAAACCCCATCTTTTTGTTATGCTTCAAGTGCCGACAACATAGCTCGTTTGCTGAAGGGGTGGATGAAAAATCCACCAAAATCCTCTCGAACTAACTCAGCTGTGACTCAAAATTCCTTCAACAACTTGGTTACTGCAGGGACTGATACTGCATCTAGTGGAGCAAAGGGAAGCGGTGGTTACTTATCTGAAACATTTGAATCCTTGTTTGGTTTAGAGTCTTTGGAGTCTTCAAATTCTGAGTTTTCTCAATCTTTTTCACCTGAAGCTAGTACTGTTTTACAAGATGAAAGAAAGCCTGATATTGGTGCAGAAATGCCCTTCTCTTTGCTTGAAAAATGGCTTTTTGATGAAGCTTTTTGTCCTGAGAAAATAGACTGTGGTGATGCTCAGGTTTTTTAG 954 0.4046 MGRPPCCDKEGVKKGPWTPEEDIILVTYIQENGPGNWRAVPTKTGLLRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNHWNTHLKKKLKKLQTGSEGSLGDEFSASQKIPRGQWEKRLQTDIQMAKRALSEALSPEKPPTLSASNPSNSSSLSSTKQTPSFCYASSADNIARLLKGWMKNPPKSSRTNSAVTQNSFNNLVTAGTDTASSGAKGSGGYLSETFESLFGLESLESSNSEFSQSFSPEASTVLQDERKPDIGAEMPFSLLEKWLFDEAFCPEKIDCGDAQVF* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00701 317 Gene3D - 69 136 - -
Rops8g00701 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops8g00701 317 MobiDBLite consensus disorder prediction 159 186 - -
Rops8g00701 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops8g00701 317 SMART sant 66 114 IPR001005 -
Rops8g00701 317 SMART sant 13 63 IPR001005 -
Rops8g00701 317 CDD SANT 16 61 IPR001005 -
Rops8g00701 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 234 - -
Rops8g00701 317 Gene3D - 13 66 - -
Rops8g00701 317 MobiDBLite consensus disorder prediction 165 186 - -
Rops8g00701 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops8g00701 317 FunFam Transcription factor MYB30 68 126 - -
Rops8g00701 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops8g00701 317 MobiDBLite consensus disorder prediction 119 142 - -
Rops8g00701 317 CDD SANT 69 111 IPR001005 -
Rops8g00701 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops8g00701 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops8g00701 317 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops8g00701 317 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00701 Rops-Chr8 14277829 14279425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00701 1 302 MYB Transcription Factor Family AT5G62470 51.143 2.61e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g00701 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00701 K09422 - gmx:780543 434.876