Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00698 ATGAAGAAGTGTCATGAAGAGGGACCTGTGACTGTTAAGAAAGTGAGATATAAGCAGTGCTTTAAGAACCACGCATGCAAAAGTAGAGGGCGTGCTGAGGATGGCTGCCAGGAGTTCCTGGCAAGTGGGGCAGAAGGAACAAGTGCTGCTCTCACTTGTGCTGCTTGTGGATGCCATAGGAACTTCCATTTCCAAAAGGAGGAGTTTGAAGTGAGATATATGGAGTGCTATAAGAACCACGCATGCAAAAGGGGAGAGCATGCTTCGGATGGCTGCCAGGAGTTCGTGGCAAGTGGGGCAGAAGGAACAAGTGCTGCTTTCACTTGTGCTGTTTGTGAATGCCATAGGAGCTTCCATAGGAAAAAGGAGTTTGAAGTTGTGCTTGAGAGTGCTCCTCCTCCAAACAATGCAAGTTGA 417 0.482 MKKCHEEGPVTVKKVRYKQCFKNHACKSRGRAEDGCQEFLASGAEGTSAALTCAACGCHRNFHFQKEEFEVRYMECYKNHACKRGEHASDGCQEFVASGAEGTSAAFTCAVCECHRSFHRKKEFEVVLESAPPPNNAS* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00698 138 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 73 122 IPR006456 -
Rops8g00698 138 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 16 65 IPR006456 -
Rops8g00698 138 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 72 122 IPR006456 -
Rops8g00698 138 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 17 66 IPR006456 -
Rops8g00698 138 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 68 125 - -
Rops8g00698 138 Pfam ZF-HD protein dimerisation region 14 67 IPR006456 -
Rops8g00698 138 Pfam ZF-HD protein dimerisation region 71 123 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00698 Rops-Chr8 14209210 14209626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00698 10 71 Zinc finger-homeobox gene family AT3G28917 63.492 9.30e-20 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops8g00698 ZF-HD_dimer 7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00698 - - aew:130761175 110.538