Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00691 ATGTACGAATCTTTATTAGAGAGGATTGACAGTGATTGGAGGGGACAAGACTGTAGTTCCAATGAAGTCTCATCCTCCAAATCGACCACCACTACGGACTTCCCTCGATCATCTATCCTTTGTCTTTTAGAGGTGGGTTCCGAGCCATCCAAACTTGAAGAGTCGTCATCAGTTCCAGATTGGTCCACCTTAAGATTTTGGGATGCATTGAAGGGACCTCCAACCTCCACTGTGGAACTGCCTGATTTGAAGCAAAGGAGAGTAGAGAAGAGTCATGAAGAAGTGTCAAGTGGTTGCAAAAGTAGAGGGCGTGCTGAGGATGGCTACCAGGAGTTCCTGGCAAGTGGGGCAGAAGGAACAAGTGCTGCTTTCACTTGTGCTGCTTGTGAATGCCATAGGAACTTCCGTAGGAAAGAGGAGGAGTTTGAAGTTGTGCTTGAGAGTGCTCCTCCTCCAAACAATGCAAGTTGA 471 0.4735 MYESLLERIDSDWRGQDCSSNEVSSSKSTTTTDFPRSSILCLLEVGSEPSKLEESSSVPDWSTLRFWDALKGPPTSTVELPDLKQRRVEKSHEEVSSGCKSRGRAEDGYQEFLASGAEGTSAAFTCAACECHRNFRRKEEEFEVVLESAPPPNNAS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00691 156 Pfam ZF-HD protein dimerisation region 102 140 IPR006456 -
Rops8g00691 156 MobiDBLite consensus disorder prediction 16 33 - -
Rops8g00691 156 MobiDBLite consensus disorder prediction 1 15 - -
Rops8g00691 156 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 100 143 - -
Rops8g00691 156 MobiDBLite consensus disorder prediction 1 33 - -
Rops8g00691 156 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 139 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00691 Rops-Chr8 14045399 14050616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00691 103 156 Zinc finger-homeobox gene family AT3G28917 56.364 1.83e-13 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops8g00691 ZF-HD_dimer 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00691 - - tcc:18601512 77.7962