Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00690 ATGAACAACTCCATAGAAGCCCCAACCAAAGCTGACACAACCTCGATCTTCAAGTACCAATCGAGAACTCCAATGACAAGGAAGAAGTGTCAAGTGGTTGTGAGAAGAGAGGAACCTGTGACTGTTAACAAAGTGAGATATATGGAGTGCTTGAAAAACCATGCAGTCAAAGTTGGAGGGTATGCTGTGGATGGCTGCAGGGAGTTCATGGCAAGTGGGGCCGAAGGAACAAGTGCTGCTCTCACTTGTGCTGCTTGTGGATGCCATAGGAACTTCCATAAGAAAGAGGAGGAGATTGAAGTTGTGCTTGAGAGTGATCCTCCTCCAAACAATGCGAGTTGA 342 0.4678 MNNSIEAPTKADTTSIFKYQSRTPMTRKKCQVVVRREEPVTVNKVRYMECLKNHAVKVGGYAVDGCREFMASGAEGTSAALTCAACGCHRNFHKKEEEIEVVLESDPPPNNAS* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00690 113 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 47 96 IPR006456 -
Rops8g00690 113 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 100 - -
Rops8g00690 113 Pfam ZF-HD protein dimerisation region 44 97 IPR006456 -
Rops8g00690 113 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 46 96 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00690 Rops-Chr8 13900742 13906271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00690 28 113 Zinc finger-homeobox gene family AT3G28917 57.576 2.82e-32 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops8g00690 ZF-HD_dimer 3.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00690 - - cpap:110808513 134.035