Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00689 ATGGAAATAACCCCAACAACTACGATCAACAACAATCCAACAAGTGCAACAACAACACTACCACCACCACCACCAACAACAACAACAAAGTCCCCAGAACATGACACTGAAACACCGACCAGGATCAATACAACCTCAACAACAACACCGAAGTCTTTGTCTTTCTCCAACGGTGTTCTCAAACGCCACTCTTTCACTCACCACCACCATAACCACCACTCTATGGCCACCACCAACCACCCTATTGCAGTTACCTACAAAGAATGCCTAAAAAACCATGCAGCCAACTTAGGTGGCCATGCCTTGGACGGTTGTGGCGAGTTCATGCCATCACCAAACGCCACAGCCACCGACCCAAGTTCCATAAAATGCGCCGCCTGTGGCTGCCACCGGAATTTCCACCGCCGTGAACCTGAAGAACCACCAATCGCCACAGCCACACATGTCATAGAGTACCTACCCCATCATCGCCACCACCCTCCTCCGCCACCGTTTCAGGCCTCGAATCGGAGCCCCAATTCAGCTTCTCCGCCGCCGATCTCCTCCTCTTACTACCCCTCCGCCCCCCACATGCTCCTTGCTCTCTCCACCGGACTTGCAGTGCCACCGGAGAGCACAGCTGCACCAACAAACACCACCGCCATGGCCTCACCTGGGTCCCACACAAGAAAGCGTTTCAGGTCCAAGTTCAGCCAGGAACAGAAGGAGAAGATGCAAAGGTTCGCTGAAAGAGTTGGGTGGAAGATGCAGAAGAGAGATGAAGATTTGGTGCAAGAGTTTTGCAACGAGGTTGGTGTTGAGAGAGGAGTTCTCAAGGTTTGGATGCATAACCACAAGAACACTTTTGCTAAGAGAGATAATAATATTACTACTACTAATAATAATGATGATAATGATGATGATGATAATAATAATAATGCTGGTTCTGCTGGTGATAAGAGTTTTCTGGCTCTAGAAGATGACCCTCTCAACAACAACAATGCTAACATCAATGGCAACGGTGGTGCTGAAGATCCAAGTCATCACTACCAGAGCGATGGTGGAGCAAATGTTCGTGCTAATGGTTCATCTTCTTCTTGA 1080 0.4898 MEITPTTTINNNPTSATTTLPPPPPTTTTKSPEHDTETPTRINTTSTTTPKSLSFSNGVLKRHSFTHHHHNHHSMATTNHPIAVTYKECLKNHAANLGGHALDGCGEFMPSPNATATDPSSIKCAACGCHRNFHRREPEEPPIATATHVIEYLPHHRHHPPPPPFQASNRSPNSASPPPISSSYYPSAPHMLLALSTGLAVPPESTAAPTNTTAMASPGSHTRKRFRSKFSQEQKEKMQRFAERVGWKMQKRDEDLVQEFCNEVGVERGVLKVWMHNHKNTFAKRDNNITTTNNNDDNDDDDNNNNAGSAGDKSFLALEDDPLNNNNANINGNGGAEDPSHHYQSDGGANVRANGSSSS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00689 359 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 86 137 IPR006456 -
Rops8g00689 359 FunFam Zinc-finger homeodomain protein 2 210 284 - -
Rops8g00689 359 MobiDBLite consensus disorder prediction 320 334 - -
Rops8g00689 359 MobiDBLite consensus disorder prediction 154 183 - -
Rops8g00689 359 NCBIfam homeobox domain, ZF-HD class 223 280 IPR006455 -
Rops8g00689 359 SUPERFAMILY Homeodomain-like 216 284 IPR009057 -
Rops8g00689 359 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 85 137 IPR006456 -
Rops8g00689 359 MobiDBLite consensus disorder prediction 1 16 - -
Rops8g00689 359 Gene3D - 209 284 - -
Rops8g00689 359 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 64 281 - -
Rops8g00689 359 MobiDBLite consensus disorder prediction 285 359 - -
Rops8g00689 359 MobiDBLite consensus disorder prediction 1 55 - -
Rops8g00689 359 MobiDBLite consensus disorder prediction 203 219 - -
Rops8g00689 359 MobiDBLite consensus disorder prediction 30 55 - -
Rops8g00689 359 Pfam ZF-HD protein dimerisation region 84 138 IPR006456 -
Rops8g00689 359 MobiDBLite consensus disorder prediction 203 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00689 Rops-Chr8 13850022 13851610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00689 28 311 ZF-HD Transcription Factor Family AT3G28920 55.068 3.18e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops8g00689 ZF-HD_dimer 3.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00689 - - psat:127128550 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00689 8 13850022 13851610 Rops8g00689 8 13850022 13851610 ECH
Rops5g01395 5 29066300 29067756 Rops8g00689 8 13850022 13851610 PCT