Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00654 ATGGCTCTTCTTGGATTTCTTCTTCTTGGACTTTTCTCCATGGTCTCACATGTATATGGTTATGGGGGTTGGATCAATGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTATGCCTTCACAAATGGTAAGATGCAGGAGAAAAGGTGGAATCAGGTTCACCATCAATGGCCATTCTTACTTCAATTTAGTCCTTGTCACCAATGTTGGAGGTGCTGGTGATGTGCATGCTGTGGCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAATTGGGGACAAAATTGGCAGAGCAACTCCTACCTAAATGGACAAAGCCTTTCCTTTGTAGTCACCACAAGTAATGGCCACAGTATGGTCTCATACAATGTAGCTCCACCCAATTGGTCCTTTGGGCAGACCTACACTGGAAGGCAATTCAACTACTAA 450 0.4489 MALLGFLLLGLFSMVSHVYGYGGWINAHATFYGGSDASGTMGMPSQMVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSMVSYNVAPPNWSFGQTYTGRQFNY* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00654 149 Gene3D - 54 147 IPR036749 -
Rops8g00654 149 PRINTS Expansin signature 54 66 IPR002963 GO:0009664
Rops8g00654 149 PRINTS Expansin signature 101 122 IPR002963 GO:0009664
Rops8g00654 149 PRINTS Expansin signature 66 87 IPR002963 GO:0009664
Rops8g00654 149 PRINTS Expansin signature 130 146 IPR002963 GO:0009664
Rops8g00654 149 FunFam Expansin 55 147 - -
Rops8g00654 149 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 65 144 IPR007117 -
Rops8g00654 149 PANTHER EXPANSIN-A15 9 42 IPR002963 GO:0009664
Rops8g00654 149 Pfam Expansin C-terminal domain 56 133 IPR007117 -
Rops8g00654 149 SUPERFAMILY PHL pollen allergen 52 144 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00654 Rops-Chr8 12934202 12935718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00654 38 149 Expansin Gene Family AT3G29030 79.464 1.38e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00654 K20628 - gmx:100791784 211.846