Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00650 ATGGGGCCCAGAGGATGCATCGCGTACACACCAACAATAATCCTCAAACGACTTCGGTGGACACAAGGGAAACCACAAGAAGACAGGTTAGGAGGATATTGTTTATGGTACAAAGATGATGATGGTGCCAAAATATGGTCAAAAGAAATCAGGGAAGCATGGAAAGATATTCGAAGAGCGGGTAAAGCGGAGTTGGGTAAGCCACTATTGATTAACACTTCTGAGTATGTTGTCTGGCGTGAAGTAAGGAAAATACCTAATAATGTACCGAGTATGACTCCAGAGAATAATGATAGTTCCCAACCAATTGCTCAAATGGCTGAACAATTAGAAGTTATGAAAGCTCAGATACAATCTTTGAGCCAACAAAAGAAAGAAGTTGAATTACAAGTTTTTATTGTTAAAGAAAAATATGAAAAGATGAAAAAGAGGGTTGAACATTTACAAGATGAATGTGCTGACATGACAGAGGCTTCAAGGATGCATAAAGGGATCGACCAACGAGACAGAATGGGAGAAAAGTTTCAGGTAGAAGCTAATAGACACAAGCAAGCACGAGGGAAGCTCGGAAGGGATATCTATCTACAAAGTCAAGTGAGAATGCAGCTAGAACACAAGATTGAAGAATTAACTACTTTGCTGGAACAGACCAAGATAGACCGAGACCAAGGATGGGCATCTTCTGATCAATACCATAGTTTGTTTGTTGAAACTACAAATGCGGGAAACTGGTGGAAGTCTGAAGCCTTGGATCGTGGTGAAGAAATCATAGAATTGAAGAAAAAGTATACAAGCCTCATTGCTGAGTTGAACATCCATGTGCCAAATTTTGTTCATCGATTTGAGAAGGCTAATGAAGAAATTCTCGCAAAACTGTCGTGCAAAATCGCAAGTGTACGATTTCGTCGTCAACACATCAGTTTTCTATCTTTAACAGAGGGATTTTTTGTGAGGAAGGGATCAATGGAGAATGTTTCCGAACCAGGAAAGGAAGATCAACAATTTGAATTGCCAGCTGGTTTTAGATTTCATCCAACAGATGAAGAACTCATAAATGACTACCTTATCAAGAAGGTTATTGATAGCAGCTTCTGTGCTATAGCTATTGCTGAAGTTGATTTGAACAAATGTGAACCATGGGATTTACCTGGGTTGGCTAAAATGGGTGAAACAGAATGGTATTATTTCTGTGTGAGGGACAGAAAATACCCAACTGGTTCAAGAGCAAATAGGGCCACAGATGGTGGCTATTGGAAAGCCACAGGCAAAGATAAAGAGATAATCATGGCAAATGCATTGATTGGGATGAAGAAAACACTGGTTTTCTACAAAGGAAGAGCTCCAAAAGGTGAAAAGACCAACTGGGTCATGCATGAATTTAGATTGGAGGGTAAGCATTATGAATATAATAATATACCCAAACCTGAAAAGAGTGAATGGGTGATATGCAGAGTCTTTGAGAAGAGTCCTTGTGTTAAGAAAATGCATATTCCAAAGTTTGATGGAAAGTTCAACTCCTTTGAAGAGAAACCATCACCTGCTTCTTCTCTATTGCCTCCATTGATGGATTCTTCTCCATACACCAGTGAAACAAGAACCAATGCAGCTGAGTTGTCTCAGGTGACCTGCTTCTCCAAGCCAAATCAAACTGAGGATCAGAGAACACAAGATGACATTGTTGATAGCATGGAAACTCCTATCTTGGACTTTTCATCAAGACCCTATGATATTTCCCCTTTCGCTAAACCAACCACTGAATCCACACAGATTGCACACCAAAGTGGGAATTCCATGTTGAGGATGTTAAAGGAAAACCATGGATCAAGTGCAATGCAAAATCAGAAAGGTGAGGTTTTTATGAGAAGAGACTTTGATGGTGATATCTCCTCTGTGATATACAACAATGAAATGTTCCAAAAGTTGTTTGGGAATCAAGCACATTCATCAGCTTCTGCAGGGCCTGTGGACATTGATAGCATTTGGAATTACTGA 1992 0.3981 MGPRGCIAYTPTIILKRLRWTQGKPQEDRLGGYCLWYKDDDGAKIWSKEIREAWKDIRRAGKAELGKPLLINTSEYVVWREVRKIPNNVPSMTPENNDSSQPIAQMAEQLEVMKAQIQSLSQQKKEVELQVFIVKEKYEKMKKRVEHLQDECADMTEASRMHKGIDQRDRMGEKFQVEANRHKQARGKLGRDIYLQSQVRMQLEHKIEELTTLLEQTKIDRDQGWASSDQYHSLFVETTNAGNWWKSEALDRGEEIIELKKKYTSLIAELNIHVPNFVHRFEKANEEILAKLSCKIASVRFRRQHISFLSLTEGFFVRKGSMENVSEPGKEDQQFELPAGFRFHPTDEELINDYLIKKVIDSSFCAIAIAEVDLNKCEPWDLPGLAKMGETEWYYFCVRDRKYPTGSRANRATDGGYWKATGKDKEIIMANALIGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKHYEYNNIPKPEKSEWVICRVFEKSPCVKKMHIPKFDGKFNSFEEKPSPASSLLPPLMDSSPYTSETRTNAAELSQVTCFSKPNQTEDQRTQDDIVDSMETPILDFSSRPYDISPFAKPTTESTQIAHQSGNSMLRMLKENHGSSAMQNQKGEVFMRRDFDGDISSVIYNNEMFQKLFGNQAHSSASAGPVDIDSIWNY* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00650 663 FunFam NAC domain-containing protein 100-like 346 491 - -
Rops8g00650 663 Pfam No apical meristem (NAM) protein 338 462 IPR003441 GO:0003677|GO:0006355
Rops8g00650 663 Coils Coil 200 220 - -
Rops8g00650 663 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 336 586 - -
Rops8g00650 663 Coils Coil 103 158 - -
Rops8g00650 663 Gene3D NAC domain 346 491 IPR036093 GO:0003677|GO:0006355
Rops8g00650 663 SUPERFAMILY NAC domain 334 488 IPR036093 GO:0003677|GO:0006355
Rops8g00650 663 ProSiteProfiles NAC domain profile. 337 488 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00650 Rops-Chr8 12839268 12856984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00650 336 663 NAC Transcription Factor Family AT5G07680 50.298 2.08e-91 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g00650 NAM 2.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00650 - - gmx:100782172 498.819