Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00649 ATGGGAAGATCACCATGTTGTGATAAAGTTGGTTTAAAGAAAGGACCATGGACTCCTGAGGAAGATCAAAAGCTCTTGGCTTATATTGAAGAACATGGTCATGGAAGCTGGCGTGCTTTACCAGCAAAAGCTGGACTTCAAAGGTGTGGAAAAAGTTGTAGACTGAGATGGAGTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAACAAACCATCATTCAACTTCATGCACTCTTAGGGAACAGGTGGTCAGCAATAGCTACACATTTGCCAAAGAGAACAGATAATGAGATAAAGAACTATTGGAACACTCATCTGAAGAAAAGGTTAACAAAAATGGGAATAGACCCGGTTACCCACAAGCCCAAGAACGATGCCCTTCTCTCTAGTGAAGGCCATTCCAAAAATGCTGCAAACCTTAGCCACATGGCTCAATGGGAGAGTGCTAGGCTCGAAGCTGAAGCAAGATTGGTCAGAGAATCAAAACTACGTTCACATTCATTGCAACATCACCTTGGTAGTTCTTCATTTCCAACCTCATCTTCAAACCCGTTACTTAACAAACCAGATTCAATGAAGGTTTGGAACAGTGGTGGTTGCTTAAAATCTAATGAAGGAAATGGTAGTATTGCAACAACTGGGATCAGCTGTGACTTTGAATCACCAACTTCTTCACTATCTTCTTTCTCAGAGAATAATAATAATAATAACATGCCACTAATTAGTAGACTTGGAGAAAACACTGGCCTTATGATTGAGTTTGTGGGCACTTCAGGTTCTTCTGAGAGAGGAATTGTGAAAGAAGAAGGTGAACAAGAGTGGAAAAGTTATGAAAACTCAACCAATCTACCAGAATACAAAGATGGCATGGAGAATTCAATGCCTTTTACATCTACCCTTCATGAGTTGACAATGACAATGGAAACCACGTGGGGTTCTGAGTCTCTTAGGATCAATAGTACTAGTAGTGCACATGTTCCTGTTGCTGAGGAAGGATTCACCAATCTCTTGCTGAATGCTAATTCCGATGACCGGAGTTTGTCACCGGAGGGTGGTGGAGAGTCTAATACTTGTGATGCAAGTGGTGGTGGAAGTGGCAGTGACTTCTATGAAGATAACAAGAACTACTGGAACAGCATTCTTAATTTGGTCGATTCTTCCCCTTCTGATTCCCCCATGTTCTGA 1203 0.414 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWSNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSEGHSKNAANLSHMAQWESARLEAEARLVRESKLRSHSLQHHLGSSSFPTSSSNPLLNKPDSMKVWNSGGCLKSNEGNGSIATTGISCDFESPTSSLSSFSENNNNNNMPLISRLGENTGLMIEFVGTSGSSERGIVKEEGEQEWKSYENSTNLPEYKDGMENSMPFTSTLHELTMTMETTWGSESLRINSTSSAHVPVAEEGFTNLLLNANSDDRSLSPEGGGESNTCDASGGGSGSDFYEDNKNYWNSILNLVDSSPSDSPMF* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00649 400 CDD SANT 69 112 IPR001005 -
Rops8g00649 400 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops8g00649 400 SMART sant 13 63 IPR001005 -
Rops8g00649 400 SMART sant 66 114 IPR001005 -
Rops8g00649 400 MobiDBLite consensus disorder prediction 348 372 - -
Rops8g00649 400 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops8g00649 400 CDD SANT 16 61 IPR001005 -
Rops8g00649 400 FunFam Transcription factor RAX3 7 67 - -
Rops8g00649 400 Gene3D - 69 116 - -
Rops8g00649 400 MobiDBLite consensus disorder prediction 348 369 - -
Rops8g00649 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops8g00649 400 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops8g00649 400 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops8g00649 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops8g00649 400 FunFam MYB transcription factor 69 116 - -
Rops8g00649 400 Gene3D - 13 66 - -
Rops8g00649 400 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 237 - -
Rops8g00649 400 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00649 Rops-Chr8 12807839 12810968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00649 1 400 MYB Transcription Factor Family AT3G01140 54.878 8.53e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g00649 Myb_DNA-binding 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00649 K09422 - cave:132181307 531.946