Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00642 ATGGCAGCTTGCATATTCACGGTGTCACAGGATGGAACCGGAGATTTCAGAACGGTGCAGGAAGCAGTCGACGCCGTGCCACTCGGAAACACTCGCCGGACGGTGATTCGGGTCTCGCCGGGAATCTACCGGCAGCCGGTGTATGTGCCAAAGACCAAGAATTTCATCACTTTTGCTGGTTTGAGCCCTGAGGACACTGTGCTTACATGGAACAACACTGCCTCCAGAATCGATCACCACCAACCAGCTAGGGTGATAGGGACAGGGACGTTTGGTTGTGGAAGCACCATTGTGGAAGGGGAGGATTTTATTGCTGAGAATATTACTTTTGAGAATTCTTCCCCTGAGGGTTCAGGACAGGCAGTCGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACACTGTACTTACATTATGGCAAACAATATTTGAAAGATTGCTATATTGAAGGAAGTGTGGATTTCATCTTTGGCAATAGCACCGCTCTTTTGGAGCACTGTCATATCCACTGCAAGTCTCAAGGGTTCATAACTGCACAGGGTAGAAAATCATCACAGGAAACAACTGGCTATGTATTCTTGAGATGTGTTATCACAGGTAATGGAGGAAATTCATATTCATATCTTGGACGACCATGGGGACCTTATGGAAGGGTGGTCTTTGCCTACACATACATGGATCAATGTATAAGGCATGTTGGCTGGGATAACTGGGGGAAGATTGAGAATGAGAGAAGTGCTTGCTTCCATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCCAAACGAGTAACATGGTCTAGAGAATTGATGGATGAAGAAGCAGAGCAGTTCCTCATGCATCCTTTCATTGATCCAGAACCAGATAGACCTTGGCTTGCTCAAAGAATGGCCTTGAGGATCCCATATTCTGCTTAG 951 0.4669 MAACIFTVSQDGTGDFRTVQEAVDAVPLGNTRRTVIRVSPGIYRQPVYVPKTKNFITFAGLSPEDTVLTWNNTASRIDHHQPARVIGTGTFGCGSTIVEGEDFIAENITFENSSPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQGRKSSQETTGYVFLRCVITGNGGNSYSYLGRPWGPYGRVVFAYTYMDQCIRHVGWDNWGKIENERSACFHEYRCFGPGCCPSKRVTWSRELMDEEAEQFLMHPFIDPEPDRPWLAQRMALRIPYSA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00642 316 Gene3D - 3 309 IPR012334 -
Rops8g00642 316 SUPERFAMILY Pectin lyase-like 3 302 IPR011050 -
Rops8g00642 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 298 - -
Rops8g00642 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Rops8g00642 316 FunFam Pectinesterase 2 309 - -
Rops8g00642 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00642 Rops-Chr8 12746442 12751236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00642 5 309 Carbohydrate Esterase AT5G47500 39.809 4.32e-74 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00642 K01051 - gmx:100786786 636.336