Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00639 ATGGCAAGGAAGAGAAATGTTGCTGAAGCAGTTGAAGAGAGTAATCCATGTGAGGCAACAATGGCATGGGATGAGGTGATGAAAGAAGCTGCTGCATTAGGAAGGACAAGGAGGTGTAGAAAGAGATTTGTTGGGGTCAGACAAAGGCCATCAGGAAGATGGGTAGCTGAGATAAAAGATACCATTCAGAAGATAAGGGTGTGGTTAGGCACTTTTGATACTGCTGAAGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGCTTGCTTCGTGGTGCCAACACTAGAACAAACTTCTGGCCTTGTTCTCAATCTTCCTCAACTCCTCCTGCTCTTCCCTCAAAGATTACCAATCTCCTCCTTCAAAGGCTTAGAGCAAGGAATAACCCTTGCTCTCTTTCTTCTTCTTCTTCTTTATCCTCAAGCTCTCTTTTTATTAACCACCAACAAGAGCAACAAGCAGATGTATATGAAACTGAATCAGCATGTTTCTCAATTGACCAATTCACTGATTTCCTTAATGACACTGAAGATTGTAGCACAAGCAACATGGAACTGAATAATAGTGCACAAATTGATTACATTACAAGTAGTTTTGAATCATGTTTAACTCAAAAAGATGACTGCATGGAAAAGGAAATGGATATGGAGTGTAATTTCAGCAGTGTGATAGAAACATCAAGTGATGAATGCAATGCAGGAGGGGAAAGAGAGGAAGACAGTACAGAAGGCACTGATTTGAGTGCTCAAGATTTTCAATTTCTGGACAATGCTGTTCCATCGAATTACTATTCTCCTTTTGAGATTGCTGAAGAGATTGAGGAGCCTGTGGAGCCTGAAATCTATGGTGATGAGTCTTCAATGCTAAGAGCTGCCATAAAGAGAATGAAATATGAGAGGAAGTTCTCAGCTTCTCTTTATGCCTTCAATGGGATACCTGAGTGCTTGAAGTTGAAACTTGAATCAGGAAACAAAAAGGGAAGAGGGATTTCTAATCAACTATCCAACCTCAAGATGGCTTAGGGGGAGACCATATCTCACCAACTGATCTCTCATACAAAAAGAGTCTGA 1068 0.411 MARKRNVAEAVEESNPCEATMAWDEVMKEAAALGRTRRCRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSSTPPALPSKITNLLLQRLRARNNPCSLSSSSSLSSSSLFINHQQEQQADVYETESACFSIDQFTDFLNDTEDCSTSNMELNNSAQIDYITSSFESCLTQKDDCMEKEMDMECNFSSVIETSSDECNAGGEREEDSTEGTDLSAQDFQFLDNAVPSNYYSPFEIAEEIEEPVEPEIYGDESSMLRAAIKRMKYERKFSASLYAFNGIPECLKLKLESGNKKGRGISNQLSNLKMA*GETISHQLISHTKRV* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00639 354 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Rops8g00639 354 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Rops8g00639 354 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 302 - -
Rops8g00639 354 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Rops8g00639 354 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Rops8g00639 354 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Rops8g00639 354 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Rops8g00639 354 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Rops8g00639 354 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Rops8g00639 354 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00639 Rops-Chr8 12710375 12719787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00639 35 98 AP2-EREBP Transcription Factor Family AT5G19790 79.688 6.12e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops8g00639 AP2 6.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00639 K09286 - gmx:100796159 481.87