LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g00636	ATGGGTTGTGTAAACTCCAAGAAAGCGGTGGCCGGAGCCGCTTCTGCTTCACCGGCAGGGACTTATGTGTATTCAAGTTCAAGAAAAAAGAGCAATGGTTCTGGCAGAAGCATGGTTGTGGAGCCACCTTTGGCCTCTTCTTCTTCAAGAGGCCATTCATCTGGGGTGGTGACCCAAAAGGGTGACCCGAAACCCGAAGAGTTGAAAAAAGGAAGCTTGAGCATGAAGCTTAGTTTGTCACGTAGGTTTGTGGAAGCAGAGCAAAATGCAGCTGGTTGGCCTTCTTGGCTCACCTCTGTTGCAGGGGAAGCCATTGATGGATGGGTTCCTCTCAAAACAGATTCTTTTGAGAGATTAGATAAGATTGGACAAGGTACATATAGCAGTGTGTTCCAAGCACGTGAAGTTGAAACAGGGAGGATGGTTGCCCTGAAGAAGGTTCGCTTTGACAATCTTCAACCCGAGAGCATTAGATTCATGTCAAGAGAAATCATAATTCTCCGAACACTTGACCACCCTAACATCATCAAATTAGAGGGTATAATCACTTCACAACTATCAAATAGCATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAATATCTTCTCCTGACATCAAATTCAGTGACTCACAGATTAAATGTTACATGAGACAGCTATTAAGTGGACTTGAGCATTGTCACCTAAGAGGAATTATGCATCGAGACATTAAAGTTTCCAATATATTAGTAAACAATGAAGGCATTCTCAAGATAGGAGATTTTGGATTAGCAAACACTGTTAACCCAAATAGCAAGAACCCTTTAACAAGTCGTGTAGTGACTCTATGGTATCGACCTCCTGAGCTCTTGATGGGATCAACAAATTATGGAGTTTCAGTGGATCTGTGGAGTGTTGGTTGTGTATTTGCGGAACTTTATCTTGGAAAGCCTATCCTCAAGGGAAGAACTGAGGTGGAACAATTACACAAAATTTTTAAGCTTTGTGGGTCTCCATCTGATGAGTTCTGGAAAAAATACAAGCTTCCTCTAGGAACATTGTTTAAGCCTCAGACTAATTATGAAAGCTCTCTTAGGGAGAGGTGTAAAGGCTTTCCTGTAACTGCTATAAGCCTACTTGAGATTTTACTGTCCATTGACCCCAACAAGCGTGGAACTGCCTCCTCTGCACTTATGTCTGAGTATTTCAGCACCTTGCCATATGCTTGTAATCCATCAATCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAAGAATAGGGATGATTTGCGCAGGAAAAAGAATGGAGGTAAAGTGCGAGAGGCTGTAACATCAAGAAGGCAAAGAAAAGTCCATAAAGTTTTGCAGGACCCTAACAATGTCAGTAAACCAACTTTGAAAGAGGAAATGCAGAATATTTCTCAAAATGCTTGTAAAGATGGTGATGGTAAAGCACATCATACAAAGGGAAAAATAGGAGCTATACACAAAGAGCAACAAAAACCTTCATATGATGCAAAATCAGAAGCTGCCCAAATGATGAATGGTTCCAATGGCTACAGTGTATACTCAGGACCAGCACCAGTAACAGGATCAAGTGGCTTTACATGGGCTAAAAGGAGAAAACCAGAAGCTTCATCCATATTATCAGATGGCTCAAGAAGCAAAATCAGTGCACTGGATCCAACATTTGCAAAAGGCACTTATGATTTAACAAAACATGGGATAGAAGTTTCAGAAAGAAAACACAATTACCATACAAATCATCATGATGAGACTTCCAAGCATGGATTACAAAAGCACCAGGCTCGTCATGGTCAAAGAGAATCCTTTGATGTAGCTGATACATACCATTCAAATTATTACATGGAATTTGATCTCACAGAAAAACCAGATGCTCTAATAAATACTCAGGGCCACAAAAAATATGGTGAACTTGTGGAACAATCAATACCAACAATGATCCAAACGAATAAAAACGATGAGTTGTTGCATTGGAATGAAAATATGCGGCGATCTGTTCGCAAATCAAGGTTTGGAAGAGACAAATCAATGTCTTTTAAAGACAAATGA	2070	0.4058	MGCVNSKKAVAGAASASPAGTYVYSSSRKKSNGSGRSMVVEPPLASSSSRGHSSGVVTQKGDPKPEELKKGSLSMKLSLSRRFVEAEQNAAGWPSWLTSVAGEAIDGWVPLKTDSFERLDKIGQGTYSSVFQAREVETGRMVALKKVRFDNLQPESIRFMSREIIILRTLDHPNIIKLEGIITSQLSNSIYLVFEYMEHDLAGLISSPDIKFSDSQIKCYMRQLLSGLEHCHLRGIMHRDIKVSNILVNNEGILKIGDFGLANTVNPNSKNPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELYLGKPILKGRTEVEQLHKIFKLCGSPSDEFWKKYKLPLGTLFKPQTNYESSLRERCKGFPVTAISLLEILLSIDPNKRGTASSALMSEYFSTLPYACNPSILPKYPPSKEMDAKNRDDLRRKKNGGKVREAVTSRRQRKVHKVLQDPNNVSKPTLKEEMQNISQNACKDGDGKAHHTKGKIGAIHKEQQKPSYDAKSEAAQMMNGSNGYSVYSGPAPVTGSSGFTWAKRRKPEASSILSDGSRSKISALDPTFAKGTYDLTKHGIEVSERKHNYHTNHHDETSKHGLQKHQARHGQRESFDVADTYHSNYYMEFDLTEKPDALINTQGHKKYGELVEQSIPTMIQTNKNDELLHWNENMRRSVRKSRFGRDKSMSFKDK*	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g00636	689	FunFam	probable serine/threonine-protein kinase At1g54610	199	439	-	-
	Rops8g00636	689	ProSitePatterns	Protein kinases ATP-binding region signature.	122	145	IPR017441	GO:0005524
	Rops8g00636	689	MobiDBLite	consensus disorder prediction	19	34	-	-
	Rops8g00636	689	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	236	248	IPR008271	GO:0004672\|GO:0006468
	Rops8g00636	689	MobiDBLite	consensus disorder prediction	419	439	-	-
	Rops8g00636	689	ProSiteProfiles	Protein kinase domain profile.	116	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops8g00636	689	CDD	STKc_CDK9_like	116	400	-	-
	Rops8g00636	689	Pfam	Protein kinase domain	116	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops8g00636	689	MobiDBLite	consensus disorder prediction	415	439	-	-
	Rops8g00636	689	Gene3D	Transferase(Phosphotransferase) domain 1	199	440	-	-
	Rops8g00636	689	FunFam	probable serine/threonine-protein kinase At1g54610	103	198	-	-
	Rops8g00636	689	MobiDBLite	consensus disorder prediction	1	69	-	-
	Rops8g00636	689	PANTHER	CELL DIVISION PROTEIN KINASE	114	406	-	-
	Rops8g00636	689	SUPERFAMILY	Protein kinase-like (PK-like)	111	406	IPR011009	-
	Rops8g00636	689	SMART	serkin_6	116	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops8g00636	689	MobiDBLite	consensus disorder prediction	41	56	-	-
	Rops8g00636	689	Gene3D	Phosphorylase Kinase; domain 1	103	198	-	-
	Rops8g00636	689	MobiDBLite	consensus disorder prediction	586	605	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g00636	Rops-Chr8	12693972	12701695	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g00636	108	455	Core Cell Cycle Gene Families	AT5G10270	46.006	1.33e-105	329

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Rops8g00636		Pkinase	2.3e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g00636	-		-	lja:Lj1g3v2982400.1	1068.14