Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00635 ATGTCCACACCCAACACCGATGCCGTTACGGCGGCGCCACCCCTCACGCGCCCCACCATCACTCTCCCTCCACGTCCCTCCGCCGAGGCCTTCTTCGCCGGCGCCGCCAGTCCCGGTCCCATGACCCTCGTCTCCAGCTTCTTCGCCTCCGACTCCGGCGACTGCCGCTCCTTCTCACAACTCCTCGCTGGAGCCATGGCATCTCCACTCGCCTTCGCCACCGCCGATAATTCCGGCAAAGAAGATGATGGGTCCCACAAGGGATTCAAGCAGAGTAGACCCATGAACTTGGTCATTGCTCGTTCCCCAGTCTTCACCGTTCCACCTGGTTTGAGCCCTTCTGGGTTTCTCAACTCGCCTGGTTTCTTTTCCCCTCAGAGTCCCTTTGGGATGTCCCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCTCAATCGCATATGCACATGCAAGCTGATTACCAGCCATCTGCAGTAACAGCTCCCCCTGAACCACCGGTGGAGCAGCCATCTTTTACTGTAAATGAAACTTCAGAGCAGCAAGTGGTAGCATCTGTATCAGAACCTAGAAATGCTCAACTGGAAACATCAGAGCTTTCACATGCTGATAAGAAATATCAACCATCTTCGGTGGCCATTGACAAACCTGCAGATGATGGCTACAACTGGCGTAAGTATGGGCAGAAGCAGGTTAAGGGGAGCGAGTATCCACGGAGTTACTATAAGTGTACACATCTGAATTGCCCTGTGAAGAAGAAAGTCGAGCGTGCTCCTGATGGTCACATAACTGAAATTATCTATAAAGGCCAGCATAACCATGAAAAGCCTCAGGCTAATAGGCGTGTCAAAGATAATAGTGACTCAAATGGAAATGCAAGTGTTCAACCTAAGTCTGAGTCAAACTCACAAGGTTGGCTGGGAAATTCAAACAAATTTAGTGAAAGCATGCCTGATTGTTCAGTGCCTGAGAGTGACCAGACCTCCAATCAAGGAGCTCCCAGGCAACTACCTGGATCAAGTGAGAGTGAGGAAGTGGGTGATGTAGATAATAAGGAAGATGTAGAGGACGGTGAGCCAAACCCTAAGAGAAGGAGCATTGAGCCTGTGGTTTCTGAAGTACCTCCGTCTCAGAAGACTGTCACAGAACCCAAAATCATTGTGCAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTACAGGTGGCGAAAGTACGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCAAGGAGTTACTACAAATGCACTGCTGCAGGATGCAATGTGCGTAAGCATGTTGAGAGAGCTTCAACGGACCCCAAAGCTGTCATAACTACATATGAGGGAAAACATAATCATGATGTGCCTGCTGCTAGAAATAGCAGCCACAACACTGCTAGTAGCAATTCAATGCCATTAAAACCACATAATGGGGCACCAGAGAAGCATCCTTTGCTTAAAGATATGAATTTTGGAAATAATGACCAGAGACCTGTACATTTACGCTTAAAAGAAGAGCAAATCATAGTATGA 1542 0.487 MSTPNTDAVTAAPPLTRPTITLPPRPSAEAFFAGAASPGPMTLVSSFFASDSGDCRSFSQLLAGAMASPLAFATADNSGKEDDGSHKGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHMHMQADYQPSAVTAPPEPPVEQPSFTVNETSEQQVVASVSEPRNAQLETSELSHADKKYQPSSVAIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKDNSDSNGNASVQPKSESNSQGWLGNSNKFSESMPDCSVPESDQTSNQGAPRQLPGSSESEEVGDVDNKEDVEDGEPNPKRRSIEPVVSEVPPSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTAAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTASSNSMPLKPHNGAPEKHPLLKDMNFGNNDQRPVHLRLKEEQIIV* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00635 513 MobiDBLite consensus disorder prediction 200 225 - -
Rops8g00635 513 Pfam WRKY DNA -binding domain 400 456 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g00635 513 Pfam WRKY DNA -binding domain 221 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g00635 513 SUPERFAMILY WRKY DNA-binding domain 391 459 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g00635 513 MobiDBLite consensus disorder prediction 269 285 - -
Rops8g00635 513 MobiDBLite consensus disorder prediction 269 381 - -
Rops8g00635 513 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 119 474 IPR044810 GO:0003700
Rops8g00635 513 MobiDBLite consensus disorder prediction 455 498 - -
Rops8g00635 513 MobiDBLite consensus disorder prediction 286 340 - -
Rops8g00635 513 MobiDBLite consensus disorder prediction 461 477 - -
Rops8g00635 513 Gene3D WRKY domain 208 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g00635 513 Gene3D WRKY domain 384 460 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g00635 513 SUPERFAMILY WRKY DNA-binding domain 219 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g00635 513 FunFam WRKY transcription factor 33 386 452 - -
Rops8g00635 513 ProSiteProfiles WRKY domain profile. 215 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g00635 513 ProSiteProfiles WRKY domain profile. 394 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g00635 513 MobiDBLite consensus disorder prediction 1 23 - -
Rops8g00635 513 SMART WRKY_cls 399 458 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g00635 513 SMART WRKY_cls 220 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g00635 513 FunFam WRKY transcription factor 209 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00635 Rops-Chr8 12680339 12685414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00635 15 511 WRKY Transcription Factor Family AT2G03340 53.371 3.80e-150 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops8g00635 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00635 - - gmx:100796679 887.1