Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00626 ATGGGTTCTTACTTCTCAGAGAAAGAGAACCGTGTGGTGGAAACTCTCACCCCACAAAGAGATGACACTGATACCCTTCATGCCATGGTGCTTGGTGCCAATGTGGTGTTTCCTGCAGCACTTAACGCTGCAATTGAACTCAACCTTTTTGAGATCATTGCCAAGCAAAGTTCACCAGAAAGTGGTGGATTCATGTCACCCACTGAAATTGCTTCTAAGTTACCAAACCAACACTCTGACTTGCCAAGTAGGCTTGACCGTTTGCTACGCTTGCTTGCTAGCTATTCTCTTCTTACTGTTTCCATTCGCACCAATGAAGATGGTAGCATGGTGAGATTTTATGGGATCTCACCTTCTGGTAAATATTTCGTGTATGATGAAGATGGTGATGGTTATCTAGCTTCGTTCACTTCATTTTTGTGTCACCGTGCACTGTTAGGGGTTTGGCTGAATTTTAAGGAAGCAATTATTGATCCAGAGATTGACCTATTCAAGAAAGTTCATGGAACATCCAAGTTTGAGCTGAATTTTAAGGAAGCAATTATTGATCCAGAGATTGACCTATTCAAGAAAGTTCATGGAACATCCAAGTTTGAGTACTTTGGAAAAGATCCAGAAACAAATCACGTATTTAACACAGCAATGGCTGATATATGCACATCCCATATGAAAAGAATACTTGAAATATACACAGGATTTGAGGGAATATCAACTTTGGTTGATGTAGCAGGTGGAACTGGACAAGGTCTAAAATTTATCATCTCCAAATACCCTTCAATTAAGGGGATTAATTTTGACCTCCCACAAGTGATTAAAAATGCACCACCACTTCCAGGGATAGAGCATGTTGGAGGAAATATGTTTGAAAGTATTCCAAAGGGTGATGCCATAATACTGAAGGCTATATTGCATAATTGGTCTGACGAAAAATGCATAGAAATTTTAAGCAATTGTCACAAAGCTTTGCCAACAAATGGGAAGGTCATTATCGGGGAACTCATACTACCAGAAGATCCAAAACCTACGAATGAATATAAAACTATTTCAATTCTTGATAACATCATGTTTATCACACCTGGTGGAAGGGAAAGAACTGAGAAACAATATGAGAGTTTGGGCAAGTGCTCTGGATTTTCCAAGTTTCAAGTTGTTTGTCGCGCTTTCTCCATTTTGGGAGTGATGGAATTTTACAAATAA 1197 0.3926 MGSYFSEKENRVVETLTPQRDDTDTLHAMVLGANVVFPAALNAAIELNLFEIIAKQSSPESGGFMSPTEIASKLPNQHSDLPSRLDRLLRLLASYSLLTVSIRTNEDGSMVRFYGISPSGKYFVYDEDGDGYLASFTSFLCHRALLGVWLNFKEAIIDPEIDLFKKVHGTSKFELNFKEAIIDPEIDLFKKVHGTSKFEYFGKDPETNHVFNTAMADICTSHMKRILEIYTGFEGISTLVDVAGGTGQGLKFIISKYPSIKGINFDLPQVIKNAPPLPGIEHVGGNMFESIPKGDAIILKAILHNWSDEKCIEILSNCHKALPTNGKVIIGELILPEDPKPTNEYKTISILDNIMFITPGGRERTEKQYESLGKCSGFSKFQVVCRAFSILGVMEFYK* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00626 398 FunFam Caffeic acid O-methyltransferase 171 398 - -
Rops8g00626 398 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Rops8g00626 398 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 176 396 IPR029063 -
Rops8g00626 398 PANTHER O-METHYLTRANSFERASE 28 388 IPR016461 GO:0008168
Rops8g00626 398 FunFam Caffeic acid 3-O-methyltransferase 6 123 - -
Rops8g00626 398 Gene3D Vaccinia Virus protein VP39 175 398 IPR029063 -
Rops8g00626 398 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 398 IPR016461 GO:0008168
Rops8g00626 398 SUPERFAMILY "Winged helix" DNA-binding domain 22 128 IPR036390 -
Rops8g00626 398 PIRSF O-mtase 174 398 IPR016461 GO:0008168
Rops8g00626 398 PIRSF O-mtase 6 176 IPR016461 GO:0008168
Rops8g00626 398 Pfam O-methyltransferase domain 179 379 IPR001077 GO:0008171
Rops8g00626 398 Gene3D - 34 163 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00626 Rops-Chr8 12600942 12604911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00626 16 390 Monolignol Biosynthesis Gene Families AT5G54160 47.884 5.37e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00626 - - gmx:100798295 570.852