Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00624 ATGGGTTCTTACTTCTCAGAGAAAGAGAACCATGTGGTGGAAACTCTCACCCCACAAAGAGATGACACTGATACCCTTCATGCCATGGTGCTTGGTGCCAATGTGGTGTTTCCTGCAGCACTTAACGCTGCAATTGAACTCAACCTTTTTGAGATCATTGCCAAGCAAAGTTCACCAGAAAGTGGTGGATTCATGTCACCCACTGAAATTGCTTCTAAGTTACCAAACCAACACTCTGACTTGCCAAGTAGGCTTGACCGTTTGCTACGCTTGCTTGCTAGCTATTCTCTTCTTACTGTTTCCATTCGCACCAATGAAGATGGTAGCATGGTGAGATTTTATGGGACCTCACCTTCTGGTAAATATTTCGTCTATGATGAAGATGGTGATGGTTATCTAGCTTCGTTCACTTCATTTTTGTGTCACCGTGCACTGTTAGGGGTTTGGCTGAATTTTAAGGAAGCAATTATTGATCCAGAGATTGACCTATTCAAGAAAGTTCATGGAACATCCAAGTTTGAGTACTTTGGAAAAGATCCAGAAACAAATCACGTATTTAACACAGCAATGGCTGATATATGCACATCCCATATGAAAAGAATACTTGAAATATACACAGGATTTGAGGGAATATCAACTTTGGTTGATGTAGCAGGTGGAACTGGACAAGGTCTAAAATTTATCATCTCCAAATACCCTTCAATTAAGGGGATTAATTTTGACCTCCCACAAGTGATTAAAAATGCACCACCACTTCCAGGGATAGAGCATGTTGGAGGAAATATGTTTGAAAGTATTCCAAAGGGTGATGCCATAATACTGAAGGCTAGGCTAACTGGCTACGCAGACTGTACTCTTCTAGGTGAAGGTTGTTGA 876 0.4121 MGSYFSEKENHVVETLTPQRDDTDTLHAMVLGANVVFPAALNAAIELNLFEIIAKQSSPESGGFMSPTEIASKLPNQHSDLPSRLDRLLRLLASYSLLTVSIRTNEDGSMVRFYGTSPSGKYFVYDEDGDGYLASFTSFLCHRALLGVWLNFKEAIIDPEIDLFKKVHGTSKFEYFGKDPETNHVFNTAMADICTSHMKRILEIYTGFEGISTLVDVAGGTGQGLKFIISKYPSIKGINFDLPQVIKNAPPLPGIEHVGGNMFESIPKGDAIILKARLTGYADCTLLGEGC* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00624 291 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 276 IPR029063 -
Rops8g00624 291 Pfam O-methyltransferase domain 149 283 IPR001077 GO:0008171
Rops8g00624 291 PANTHER O-METHYLTRANSFERASE 28 278 IPR016461 GO:0008168
Rops8g00624 291 Gene3D - 5 123 IPR036388 -
Rops8g00624 291 Gene3D Vaccinia Virus protein VP39 126 285 IPR029063 -
Rops8g00624 291 SUPERFAMILY "Winged helix" DNA-binding domain 22 128 IPR036390 -
Rops8g00624 291 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Rops8g00624 291 FunFam Caffeic acid 3-O-methyltransferase 6 123 - -
Rops8g00624 291 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 291 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00624 Rops-Chr8 12564473 12567563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00624 16 291 Monolignol Biosynthesis Gene Families AT5G54160 49.643 8.51e-83 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00624 - - gmx:100798295 420.624