Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00623 ATGGGTTCTTACTTCTCAGAGAAAGAGAACCATGTGGTGGAAACTCTCACCCCACAAAGAGATGACACTGATACCCTTCATGCCATGGTGCTTGGTGCCAATGTGGTGTTTCCTGCAGCACTTAACGCTGCAATTGAACTCAACCTTTTTGAGATCATTGCCAAGCAAAGTTCACCAGAAAGTGGTGGATTCATGTCACCCACTGAAATTGCTTCTAAGTTACCAAACCAACACTCTGACTTGCCAAGTAGGCTTGACCGTTTGCTACGCTTGCTTGCTAGCTATTCTCTTCTTACTGTTTCCATTCGCACCAATGAAGATGGTAGCATGGTGAGATTTTATGGGATCTCACCTTCTGGTAAATATTTCGTGTATGATGAAGATGGTGATGGTTATCTAGCTTCGTTCACTTCATTTTTGTGTCACCGTGCACTGTTAGGGGTTTGGCTGAATTTTAAGGAAGCAATTATTGATCCAGAGATTGACCTATTCAAGAAAGTTCATGGAACATCCAAGTTTGAGTACTTTGGAAAAGATCCAGAAACAAATCACGTATTTAACACAGCAATGGCTGATATATGCACATCCCATATGAAAAGAATACTTGAAATATACACAGGATTTGAGGGAATATCAACTTTGGTTGATGTAGCAGGTGGAACTGGACAAGGTCTAAAATTTATCATCTCCAAATACCCTTCAATTAAGGGGATTAATTTTGACCTCCCACAAGTGATTAAAAATGCACCACCACTTCCAGGGATAGAGCATGTTGGAGGAAATATGTTTGAAAGTATTCCAAAGGGTGATGCCATAATACTGAAGGCTATATTGCATAATTGGTCGGACGAAAAATGCATAGAAATTTTAAGCAATTGTCACAAAGCTTTGCCAACAAATGGGAAGGTCATTGTCGGGGAACTCATACTACCAGAAGATCCAAAACCTACGAATGAATATAAAACTATTTCAATTCTTGATAACATCATGTTTATCACACCTGGTGGAAGGGAAAGAACTGAGAAACAATATGAGAGTTTGGGCAAGTGCTCTGGATTTTCCAAGTTTCAAGTTGTTTGTCGCGCTTTCTCTATTTTGGGAGTGATGGAATTTTACAAATAA 1122 0.3957 MGSYFSEKENHVVETLTPQRDDTDTLHAMVLGANVVFPAALNAAIELNLFEIIAKQSSPESGGFMSPTEIASKLPNQHSDLPSRLDRLLRLLASYSLLTVSIRTNEDGSMVRFYGISPSGKYFVYDEDGDGYLASFTSFLCHRALLGVWLNFKEAIIDPEIDLFKKVHGTSKFEYFGKDPETNHVFNTAMADICTSHMKRILEIYTGFEGISTLVDVAGGTGQGLKFIISKYPSIKGINFDLPQVIKNAPPLPGIEHVGGNMFESIPKGDAIILKAILHNWSDEKCIEILSNCHKALPTNGKVIVGELILPEDPKPTNEYKTISILDNIMFITPGGRERTEKQYESLGKCSGFSKFQVVCRAFSILGVMEFYK* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00623 373 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Rops8g00623 373 FunFam Caffeic acid 3-O-methyltransferase 6 123 - -
Rops8g00623 373 SUPERFAMILY "Winged helix" DNA-binding domain 22 128 IPR036390 -
Rops8g00623 373 PIRSF O-mtase 6 373 IPR016461 GO:0008168
Rops8g00623 373 Gene3D Vaccinia Virus protein VP39 126 373 IPR029063 -
Rops8g00623 373 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 373 IPR016461 GO:0008168
Rops8g00623 373 Gene3D - 5 123 IPR036388 -
Rops8g00623 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 371 IPR029063 -
Rops8g00623 373 PANTHER O-METHYLTRANSFERASE 28 363 IPR016461 GO:0008168
Rops8g00623 373 Pfam O-methyltransferase domain 149 354 IPR001077 GO:0008171
Rops8g00623 373 FunFam Caffeic acid O-methyltransferase 127 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00623 Rops-Chr8 12547964 12550608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00623 16 365 Monolignol Biosynthesis Gene Families AT5G54160 51.275 8.08e-119 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00623 - - gmx:100798295 588.186