Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00621 ATGGGTTCTTACTTCTCAGAGAAAGAGAACCATGTGGTGGAAACTCTCACCCCACAAAGAGATGACACTGATACCCTCCATGCCATGGTGCTTGGTGCCAATGTGGTGTTTCCTGCAGCACTTAACGCTGCAATTGAGCTCAACCTTTTTGAGATCATTGCCAAGCAAAGTTCACCAGAAAGTGGTGGATTCATGTCACCCACTGAAATTGCTTCTAAGTTACCAAACCAACACTCTGACTTGCCAAGTAGGCTTGACCGTTTGCTACGCTTGCTTGCTAGCTATTCTCTTCTTACTGTTTCCATTCGCACCAATGAAGATGGTAGCATGGTGAGAGTTTATGGGATCTCACCTTCTGGTAAATATTTCGTCTATGATGAAGATGGTGATGGTTATCTAGCTTCGTTCACTTCATTTTTGTGCCACCGTGCACTGTTAGGGGTTTGGCTGAATTTTAAGGAAGCAATTATTGATCCAGAGATTGACCTATTCAAGAAAGTTCATGGAACATCCAAGTTTGAGTACTTTGGAAAAGATCCAGAAACAAACCACGTATTTAACACAGCAATGGCTGATATATGCACATCCCATATGAAAAGAATACTTGAAATATACACAGGATTTGAGGGAATATCAACTTTGGTTGATGTAGCAGGTGGAACTGGACAAGGTCTAAAATTTATCATCTCCAAATACCCTTCAATTAAGGGGATTAATTTTGACCTCCCACAAGTGATTAAAAATGCACCACCACTTCCAGGTAATCAATCCATCTCTTTTGCCATAACTTTGGGGGATCACATCTCCTGA 810 0.4148 MGSYFSEKENHVVETLTPQRDDTDTLHAMVLGANVVFPAALNAAIELNLFEIIAKQSSPESGGFMSPTEIASKLPNQHSDLPSRLDRLLRLLASYSLLTVSIRTNEDGSMVRVYGISPSGKYFVYDEDGDGYLASFTSFLCHRALLGVWLNFKEAIIDPEIDLFKKVHGTSKFEYFGKDPETNHVFNTAMADICTSHMKRILEIYTGFEGISTLVDVAGGTGQGLKFIISKYPSIKGINFDLPQVIKNAPPLPGNQSISFAITLGDHIS* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00621 269 Gene3D Vaccinia Virus protein VP39 126 264 IPR029063 -
Rops8g00621 269 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 269 IPR016461 GO:0008168
Rops8g00621 269 SUPERFAMILY "Winged helix" DNA-binding domain 22 128 IPR036390 -
Rops8g00621 269 Gene3D - 5 123 IPR036388 -
Rops8g00621 269 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Rops8g00621 269 Pfam O-methyltransferase domain 149 252 IPR001077 GO:0008171
Rops8g00621 269 PANTHER O-METHYLTRANSFERASE 28 249 IPR016461 GO:0008168
Rops8g00621 269 FunFam Caffeic acid 3-O-methyltransferase 6 123 - -
Rops8g00621 269 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 252 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00621 Rops-Chr8 12518744 12520351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00621 16 258 Monolignol Biosynthesis Gene Families AT5G54160 48.980 2.64e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00621 - - gmx:100798295 385.571