Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00620 ATGGGTTCTTACTTCTCAGAGAAAGAGAACCATGTGGTGGAAACTCTCACCCCACAAAGAGATGACACTGATACCCTTCATGCCATGGTGCTTGGTGCCAATGTGGTGTTTCCTGCAGCACTTAACGCTGCAATTGAGCTCAACCTTTTTGAGATCATTGCCAAGCAAAGTTCACCAGAAAGTGGTGGATTCATGTCACCCTCTGAAATAGCTTCTAAGTTACCAAACCAACACTCTGACTTGCCAAGTAGGCTTGACCGTTTGCTACGCTTGCTTGCTAGCTATTCTCTTCTTACTGTTTCCACTCGCACCAATGAAGATGGTAGCATGGTGGGAGTTTATGGGATCTCACCTTCTGGTAAATATTTCGTCTGTGATGAAGATGGTGATGGCTATCTGGCTTCGTTCACATCATTTTTGTGTCACCGTGCACTGTTAGGGGTTTGGCTGAATTTTAAGGAAGCAATTATTGATCCAGAGATTGACCTATTCAAGAAAGTTCATGGAACATCCAAGTTTGAGTACTTTGGAAAAGATCCAGAAACAAACCACGTATTTAACACAGCAATGGCTGATATATGCACATCCCATATGAAAAGAATACTTGAAATATACACAGGATTTGAGGGAATATCAACTTTGGTTGATGTAGCAGGTGGAACTGGACAAGGTCTAAAATTTATCATCTCCAAATACCCTTCAATTAAGGGGATTAATTTTGACCTCCCACAAGTGATTAAAAATGCACCACCACTTCCAGGGATAGAGCATGTTGGAGGAAATATGTTTGAAAGTATTCCAAAGGGTGATGCCATAATACTGAAGCTTGTGAATATGCATTGTGATCCTCACCATGAGAATTGGAAGATTGAGCTTCTGTGTGTGGAAATTAAGGATCAAAATCCAACCTTTCTTCTTGGATATGATCAGGGGATTAGTATGTTGCTTGAAGGCATATTTGGATTTGTAGTTGGTACTGCTGCATCTATGCTAAAGTATCTTGGATACATAAACTTGAGGAATTTAGGTAGATGGATACTTTTTTGGTTGAAATCCATGTACAGTCAGGCAAAATGTGAATTAGCAGGATTTCTTAGCCTTACACGCACATGGCAGGTTAAATCGTCCAATAGAGGTTGCATCATGTGGTTCTTCATTGCAATTTTCTGCTTCTTGCTTGTTTATGTTGTCAATCTCTTGCCATTATTTTGTGTTTTGCTTTTGGAATGGGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCTCTTTGGGATAAAAATGTTGAATATGAATACATGCAGCAAGAATGCGCCTACCTTGCCATGATCTACACCAGAATATTAGAGAATCCAAATCATCAATTGGTCTTTACTTGGTATGGTGCAGCGATTGAAATGGATGGTATTACTGAAACTGATTATACTAGGGATGAGGTAAAACATTGTAGGCCTATTACATGTACTCTTTCTCTGAAAGTCACTGTAAATGTGCATGACATGTCTCAATCAACCCCAACTTTGGAATTGATTATCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCATGTAGACAATTGCTCACAACTAGATGGAGTTCTTTAATGACTTCAAAGAGATTTGTTGTTGGAGATTTGTTGCTCACATTGTAA 1674 0.3925 MGSYFSEKENHVVETLTPQRDDTDTLHAMVLGANVVFPAALNAAIELNLFEIIAKQSSPESGGFMSPSEIASKLPNQHSDLPSRLDRLLRLLASYSLLTVSTRTNEDGSMVGVYGISPSGKYFVCDEDGDGYLASFTSFLCHRALLGVWLNFKEAIIDPEIDLFKKVHGTSKFEYFGKDPETNHVFNTAMADICTSHMKRILEIYTGFEGISTLVDVAGGTGQGLKFIISKYPSIKGINFDLPQVIKNAPPLPGIEHVGGNMFESIPKGDAIILKLVNMHCDPHHENWKIELLCVEIKDQNPTFLLGYDQGISMLLEGIFGFVVGTAASMLKYLGYINLRNLGRWILFWLKSMYSQAKCELAGFLSLTRTWQVKSSNRGCIMWFFIAIFCFLLVYVVNLLPLFCVLLLEWGLAYVGTDYLSFPLWDKNVEYEYMQQECAYLAMIYTRILENPNHQLVFTWYGAAIEMDGITETDYTRDEVKHCRPITCTLSLKVTVNVHDMSQSTPTLELIIKDLHGYEWRFKHIFRGQPCRQLLTTRWSSLMTSKRFVVGDLLLTL* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00620 557 SUPERFAMILY DNA-binding pseudobarrel domain 498 555 IPR015300 -
Rops8g00620 557 Gene3D Vaccinia Virus protein VP39 126 295 IPR029063 -
Rops8g00620 557 Pfam O-methyltransferase domain 149 278 IPR001077 GO:0008171
Rops8g00620 557 Gene3D - 475 557 IPR015300 -
Rops8g00620 557 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Rops8g00620 557 Gene3D - 5 123 IPR036388 -
Rops8g00620 557 SUPERFAMILY "Winged helix" DNA-binding domain 22 128 IPR036390 -
Rops8g00620 557 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 285 IPR029063 -
Rops8g00620 557 PANTHER O-METHYLTRANSFERASE 28 278 IPR016461 GO:0008168
Rops8g00620 557 FunFam Caffeic acid 3-O-methyltransferase 6 123 - -
Rops8g00620 557 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 375 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00620 Rops-Chr8 12491747 12505032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00620 16 281 Monolignol Biosynthesis Gene Families AT5G54160 49.817 6.24e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g00620 Methyltransf_2 3e-31 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00620 - - gmx:100798295 419.853