Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00619 ATGAGTTCCTATTCCACAGAGAAAGAGAACCATGCCCCACAAAGAGATGACACCGATACCCTCCATGCCATGGTGCTTGGTGCTAATATGGTGTTTCCTGCAGCCCTTAACGCTGCAATTGAACTCAACCTTTTTGAGATCATTGCCAAGCAAAGTTCACCAGAAAGTGGTGGGTTCATGTCACCCTCTGAAATAGCTTCTAAGTTACCAAACCAACACTCTGACTTGCCAAGTAGGCTTGACCGTTTGCTACGCTTGCTTGCTAGCTTTTCTCTTCTTACTATCTCAACTCGTACTAATGAAGATGGTAGCATGGTGAGAGTTTATGGAATCTCACCATCTGGTAAATATTTTGTTTATGATGAAGATGGTGATGGTTATTTGGCTTCATTCGCATCATTTCTGTCTCACCGTGCACTGTTAGGAGTGTGGTCGAATTTTAAGGAAGCAGTCGTTGATCCTGAGATTGACCTATTCAAGAAAGTTCATGGAATATCCAAGTACGAGTACTTCGGGAAAGATCCACAAATAAACCATGTTTTTAATCAGTCAATGACTGATATTTGCTCAACCCATATGAAAAAAATACTTGAAATATACAAAGGTTATGAGGGAATATCAACTTTGGTTGACGTAGGAGGTGGAAATGGACAAAGTTTGAAAATGATCATCTCTAAATACCCTTCAATTAAGGCCATTAATTTTGACCTCCCACAAGTGATTGAACATGCACCACCCATTCCTGGGATTGAACATGTTGGAGGAAGTATGTTTGAAAGTGTCCCACATGGTGATGCCATTATACTAAAGGCTGTATGCCATAATTGGTCAGATGAAAAATGCATAGAAATTTTAAGCAATTGTCACAAAGCTTTGCCACCAAATGGAAAGGTCATTATTGTGGAGCTTGTACTTCCAGAAGATCCAGAACCAACAAATGCATCTAGAATTATTTCAATTCTTGATAACATCATGTTTATCACAGCTGGTGGAAGGGAAAGAACTGAGAAACAATATGAGAGTTTGGGTAAACGTTCTGGATTTTCCAAGTTTCAAGTTGCTTGTCGTGCTTTCTCTATTTTGGGAGTGATGGAGCTTTACAAGTAA 1107 0.3966 MSSYSTEKENHAPQRDDTDTLHAMVLGANMVFPAALNAAIELNLFEIIAKQSSPESGGFMSPSEIASKLPNQHSDLPSRLDRLLRLLASFSLLTISTRTNEDGSMVRVYGISPSGKYFVYDEDGDGYLASFASFLSHRALLGVWSNFKEAVVDPEIDLFKKVHGISKYEYFGKDPQINHVFNQSMTDICSTHMKKILEIYKGYEGISTLVDVGGGNGQSLKMIISKYPSIKAINFDLPQVIEHAPPIPGIEHVGGSMFESVPHGDAIILKAVCHNWSDEKCIEILSNCHKALPPNGKVIIVELVLPEDPEPTNASRIISILDNIMFITAGGRERTEKQYESLGKRSGFSKFQVACRAFSILGVMELYK* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00619 368 Gene3D Vaccinia Virus protein VP39 121 368 IPR029063 -
Rops8g00619 368 Pfam Dimerisation domain 35 88 IPR012967 GO:0046983
Rops8g00619 368 FunFam Caffeic acid 3-O-methyltransferase 2 118 - -
Rops8g00619 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 368 IPR016461 GO:0008168
Rops8g00619 368 Gene3D - 2 118 IPR036388 -
Rops8g00619 368 PANTHER O-METHYLTRANSFERASE 23 351 IPR016461 GO:0008168
Rops8g00619 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 364 IPR029063 -
Rops8g00619 368 PIRSF O-mtase 1 368 IPR016461 GO:0008168
Rops8g00619 368 FunFam Caffeic acid O-methyltransferase 122 368 - -
Rops8g00619 368 Pfam O-methyltransferase domain 144 349 IPR001077 GO:0008171
Rops8g00619 368 SUPERFAMILY "Winged helix" DNA-binding domain 17 123 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00619 Rops-Chr8 12483000 12485464 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00619 16 368 Monolignol Biosynthesis Gene Families AT5G54160 49.435 1.13e-119 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00619 - - gmx:100798295 562.762