Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00616 ATGCCTAACTTCTCTTCTCTCCCTCGGTGGATTGGTCGACATGTTTTGGGAAGAAAACCTAACGGTGGAGACAGTAGTAGTGAATTTGCTGTTGGTGTTGTTGATGACATTCCAATCAGCAACAACGTTGGAGAGTGTTACGCTTGCACGCAAGTGGGTGTGCCGGTATTTCACTCCACAAGTTGTGACAGCTGTCACCAGCCTCAATGGGAGGCCTCTGCTGGTTCTTCCTTGGTTCCAATTCAGAACCGAACAGGTAAGGCCCAAAGTGTCCGGGTCGCAACCCGGATTAACTATGGACCTTTCGGGTCGGTTTTGGATCCAAGGAGCAAGCGCGTGCAAGTGTGGAACCGTGCGTTGTTGTTGGCGCGTGGGGTGGCGCTGGCTATTGATCCGCTGTTTTTCTACGCGCTGTCGATAGGGCGGGAGGGGTCGCCGTGTTTGTACATGGATGGGGGGCTTGCGGCGATGGTTACGGTGGCGCGCACGTGTGTGGACGCGGTGCATCTGGTGCACGTGTGGTTGCAGTTTAGGTTGGCGTACGTGTCGAGAGAGTCGCTTGTGGTTGGGTGTGGGAAACTCGTGTGGGACGCACGTGCCATAGCTTCCCATTACCTTCGATCTTTCAAGGGATTCTGGTTTGATGCCTTCGTTATCCTCCCCGTTCCTCAGGCTGTGTTTTGGTTAGTAGTACCGAAACTGATAAGAGAAGAGAGGATTAAAATCATTATGACCACAATGCTATTAATTTTTTTGTTCCAATTTCTCCCTAAGGTTTACCATAGCATCTGCATGATGAGAAGAATGCAAAAAGTCACAGGCTACATCTTTGGCACCATTTGGTGGGGTTTTGGTCTCAATCTCATAGCTTATTTCATTGCTTCTCATGTTGCTGGAGGGTGCTGGTATGTCCTGGCAATTCAACGTGTTGCATCATGCCTCAGGCTACAGTGTGAAAGAACTCATGGATGCAATCTCTCTGTGTCATGCTCAGAGGAGGTATGCTACCAGTCTTTGTTACCAGCAGGCACTATAAGAAATGCATGTGGTGGAAACTCAACAATAGTGTTGAGAAAGCCCTTGTGCTTAGATGTTGAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCTGTCATATCCAGCAACTCATTGGCTGTCAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTTGGAAACGATCTTGAACCCACAAGTAACTGGCTAGAAGTGATTTTCAGCATATGCATCGTACTCAGTGGACTACTGCTTTTCACTTTGTTGATTGGTAACATCCAGGTATTCTTACATGCTGTCATGGCAAAGAAGAGAAAGATGCAGCTAAGATGTCGTGACATGGAATGGTGGATGAGGAGGAGGCAGTTGCCATCGCGATTAAGACAAAGAGTTCGCCATTTTGAACGGCAGAGATGGACAGCCATGGGAGGAGAAGATGAGATGGAAATGATCAAAGACTTGCCTGAGGGACTGAGGAGGGACATCAAACGCTATCTTTGCCTGGACCTCATTAAAAAAGTACCTTTGTTCCAAAATTTGGATGATCTTATTCTTGACAACATCTGCGACAGGGTGAAGCCCCTAGTCTTCTCTAAAGATGAAAAGATGATTAGAGAAGGTGACCCTGTACAAAGGATGGTATTCATTGTTCGTGGACGCATAAAAAGGAACCAAAGTCTCAGCAAAGGCATGGTAGCCACCAGTGTCCTTGAACCAGGAGGGTTTTTGGGTGATGAACTACTTTCTTGGTGCTTACGCCGCCCATTTATAGATAGGCTTCCAGCCTCTTCAGCCACATTTGTGTGTCTTGAATCAGTAGAGGCCTTTGGCCTTGATGCTCATCACTTGAGATACATCACTGATCATTTCAGATACAAATTTGCAAATGAGAGGCTAAAGAGAACAGCAAGATACTACTCATCCAATTGGAGAACTTGGGCTGCTGTAAACATTCAATTTGCTTGGAGACGTTACAGGCAGAGGACTAGAGGTCCAGTGACCCCTGTAAGAGAACAAAATGGAGGCACTGAACGCAGGCTCTTGCAGTATGCTGCAATGTTCATGTCAATAAGGCCACATGACCATCTTGAATGA 2130 0.4695 MPNFSSLPRWIGRHVLGRKPNGGDSSSEFAVGVVDDIPISNNVGECYACTQVGVPVFHSTSCDSCHQPQWEASAGSSLVPIQNRTGKAQSVRVATRINYGPFGSVLDPRSKRVQVWNRALLLARGVALAIDPLFFYALSIGREGSPCLYMDGGLAAMVTVARTCVDAVHLVHVWLQFRLAYVSRESLVVGCGKLVWDARAIASHYLRSFKGFWFDAFVILPVPQAVFWLVVPKLIREERIKIIMTTMLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRLQCERTHGCNLSVSCSEEVCYQSLLPAGTIRNACGGNSTIVLRKPLCLDVEGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWTAMGGEDEMEMIKDLPEGLRRDIKRYLCLDLIKKVPLFQNLDDLILDNICDRVKPLVFSKDEKMIREGDPVQRMVFIVRGRIKRNQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESVEAFGLDAHHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGPVTPVREQNGGTERRLLQYAAMFMSIRPHDHLE* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00616 709 SUPERFAMILY cAMP-binding domain-like 448 635 IPR018490 -
Rops8g00616 709 ProSiteProfiles cAMP/cGMP binding motif profile. 521 631 IPR000595 -
Rops8g00616 709 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 93 675 - -
Rops8g00616 709 Pfam Ion transport protein 114 439 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops8g00616 709 SUPERFAMILY Voltage-gated potassium channels 107 442 - -
Rops8g00616 709 Gene3D Jelly Rolls 519 637 IPR014710 -
Rops8g00616 709 CDD CAP_ED 521 631 IPR000595 -
Rops8g00616 709 Gene3D - 147 444 - -
Rops8g00616 709 Gene3D Helix hairpin bin 447 512 - -
Rops8g00616 709 SMART cnmp_10 521 647 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00616 Rops-Chr8 12442431 12449579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00616 10 709 Ion Channels AT5G15410 76.323 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00616 K05391 - gmx:100798823 1251.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00616 8 12442431 12449579 Rops8g00616 8 12442431 12449579 ECH