Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00614 ATGTGGAGCTTTGCATCAAGTTGCATGGCTGGTAGTGTGGCTCTGAAAAATGATTCTCCAAAGCCAACTAACCCTGCTTCAGAATGTTCTGATGATGAGACATCCATGGTGAGCAGAGAGGAAGGGCTGGAATGCCCAATATGCTGGGAATCCTTTAACATTGTTGAAAACGTGCCTTATGTTTTATGGTGTGGCCACACCCTTTGTAAAAATTGCATCCTGGGACTGCAATGGGCTGTGGTGAAATTTCCAACACTGCCGATTCAGCTTCCACTTTTTATCTCCTGCCCATGGTGCAACCTTTTATCTTTCCGTTTAGTTTACCAGGGTAATCTGAAATTCCCTCGCAAGAACTACTTTCTTCTGTGGATGGTTGAGAGCATGAATGGTGATAGAGTGAAGTCACATCCAACTTCCTGTGGGGATCATCAACCACTCTGGCCAATTAAAGACAACTCAACCATGGGAAGTCAAGTAAGCCTGGGCAACCTTCAGAGAGGACAAGTTCGTCGTCCAGAGTCATCAAGTTCCAATCGATATCATGGCAATACTGGTAATTACCTCAGTATGGAAAGACTGCACACTTCTCTGCAGAAGTCACTGGTGTTATTTGTTCACTTGACAGCAAAGTTCCCATTGATTCTTATATTTCTTTTGATTGTCTTATATGCAATACCAGCCAGTACAGTCATTTTGGCTCTCTATATACTTGTTACCATTCTGTTTGCTCTCCCATCATTTCTCATCTTGTACTTCGCATACCCTAGTTTGGATCGGCTTGTTAGGGAAATTATCAATTGA 801 0.4295 MWSFASSCMAGSVALKNDSPKPTNPASECSDDETSMVSREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYQGNLKFPRKNYFLLWMVESMNGDRVKSHPTSCGDHQPLWPIKDNSTMGSQVSLGNLQRGQVRRPESSSSNRYHGNTGNYLSMERLHTSLQKSLVLFVHLTAKFPLILIFLLIVLYAIPASTVILALYILVTILFALPSFLILYFAYPSLDRLVREIIN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00614 266 Pfam RING-type zinc-finger 45 78 IPR027370 -
Rops8g00614 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 136 IPR013083 -
Rops8g00614 266 ProSiteProfiles Zinc finger RING-type profile. 45 100 IPR001841 -
Rops8g00614 266 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Rops8g00614 266 SUPERFAMILY RING/U-box 39 103 - -
Rops8g00614 266 PANTHER UBIQUITIN-PROTEIN LIGASE 1 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00614 Rops-Chr8 12406354 12409033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00614 1 265 Miscellaneous Gene Families AT3G29270 61.654 2.88e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00614 - - gmx:100811549 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01443 5 29762014 29765435 Rops8g00614 8 12406354 12409033 PCT