Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00604 ATGATCCAGTCCCCCTATGCAATTGAAAACCACATAGCTATGGACTACACCACTTGGCCTCCAATTCAGCAAACCCAAACCCCAACAACACCACTCTCATCATATCCTCCTCCTTCATCATCTTACACTACCCATTATCTCTCTTACCCTCAAAACCCTAATCCTTCTTCTTCTTCCTCTCTCCCCCAACCCCATGGCGGCACTGTTCTGGAACCTGGACTCAACCCTCCTGGGGTTGATTCCTATACTCCATTGAACTCCAATCCAATTTCTCATCTGGGTCATGAAGGAATTCCCAATTTATTGTACGGTCATGGCCCCATGGTTGATTCAAGTTCGTTGGTGGCATCTCCTGGGTACTATTTGGATCCCAATGTACAGAATTGGGCTGCTAGAGAGGCTGTGAGGCAATATGGTGCCGACCCTGTTAGCTATGGAGCTGGCATCTCTATGCCATCAAATGGTTCAGAACAACTGGCTATTGCAAATCCTAACACCGCATGGTTGACGAATACCACAACTCAACCTCACAACAATGGAACATGGAAGAAACACCCGAAGAAAGCTAAAACTAAGATTGTGCAATCTGCATATTGCGAAGTTTGCAAGATAGATTGCACCAGCAAGGAAGTACTAGACCAGCATAAATTAGGAAAGAAGCACAAGAAGAACTTGGAGAAACTAAGAGAATCATTGAAACCACCCCAAGTTCATTCATCTGGGTCATCTAATCCTGTTATAGGACCACAATTACAGGATGACAATAGCAAATCTATCAGCGGGAATAAGAGGAAAGCTACTGAAACTGCAGAGGATTTGGAGATGAAGAAGAAAAAGGTTCTTGAAGGGGGGGCAGCAGCTGAGGCAGTTAGAATATGTGCTATATGTAACGTGGTGTGTAATAGTGAGAAAGTTTTTAATTATCATCTTGCAGGACAAAAACATGCTGCTATGTTGAAGAAAGCATCTGACCATACACAATCCAGTGCAAGTTGA 996 0.4388 MIQSPYAIENHIAMDYTTWPPIQQTQTPTTPLSSYPPPSSSYTTHYLSYPQNPNPSSSSSLPQPHGGTVLEPGLNPPGVDSYTPLNSNPISHLGHEGIPNLLYGHGPMVDSSSLVASPGYYLDPNVQNWAAREAVRQYGADPVSYGAGISMPSNGSEQLAIANPNTAWLTNTTTQPHNNGTWKKHPKKAKTKIVQSAYCEVCKIDCTSKEVLDQHKLGKKHKKNLEKLRESLKPPQVHSSGSSNPVIGPQLQDDNSKSISGNKRKATETAEDLEMKKKKVLEGGAAAEAVRICAICNVVCNSEKVFNYHLAGQKHAAMLKKASDHTQSSAS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00604 331 SUPERFAMILY beta-beta-alpha zinc fingers 291 321 IPR036236 -
Rops8g00604 331 MobiDBLite consensus disorder prediction 22 88 - -
Rops8g00604 331 MobiDBLite consensus disorder prediction 231 270 - -
Rops8g00604 331 Gene3D Classic Zinc Finger 175 228 - -
Rops8g00604 331 Gene3D Classic Zinc Finger 262 323 - -
Rops8g00604 331 SMART c2h2final6 197 221 IPR013087 -
Rops8g00604 331 SMART c2h2final6 291 315 IPR013087 -
Rops8g00604 331 MobiDBLite consensus disorder prediction 22 65 - -
Rops8g00604 331 MobiDBLite consensus disorder prediction 235 257 - -
Rops8g00604 331 Pfam Zinc-finger of C2H2 type 198 221 - -
Rops8g00604 331 Pfam Zinc-finger of C2H2 type 293 315 - -
Rops8g00604 331 SUPERFAMILY beta-beta-alpha zinc fingers 189 229 IPR036236 -
Rops8g00604 331 PANTHER ZINC FINGER PROTEIN 385B-LIKE 14 329 - -
Rops8g00604 331 SMART ZnF_U1_5 194 228 IPR003604 GO:0003676|GO:0008270
Rops8g00604 331 SMART ZnF_U1_5 288 322 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00604 Rops-Chr8 12298290 12301004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00604 199 325 C2H2 Transcription Factor Family AT5G61190 29.371 2.94e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00604 - - gmx:100814580 335.109