Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00601 ATGGCAGTTTCAAGGACCGTGAAGGATGTTTCTCCTCACGAGTTCGTCAACGCTTATGCCTCTCACCTCAAGCGTTCTGGCAAGATGGAGCTTCCTGAATGGACGGATATTGTAAAAACAGCAAAATTTAAAGAATTGGCTCCCTATGATCCTGACTGGTATTATGTTAGAGCTGCTTCCATGGCAAGAAAGATCTATTTGAGAGGCGGTCTTGGCGTTGGTGCTTTTCAGAGGATCTATGGTGGAAGCAAGAGGAATGGAAGCCGCCCTCCACACTTCTGCAAGAGCAGTGGTGCTATTGCCAGAAACATCCTGCAACAGTTGCAAAGCATGAACATCATTGAGGTTGATCCAAAAGGAGGAAGGACAATAACTTCTAGTGGTCGAAGGGATCTTGACCAAGTTGCTGGCCGGATTGTGGTTGCTCCTTGA 432 0.4699 MAVSRTVKDVSPHEFVNAYASHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARNILQQLQSMNIIEVDPKGGRTITSSGRRDLDQVAGRIVVAP* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00601 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Rops8g00601 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Rops8g00601 143 Gene3D - 1 142 IPR036388 -
Rops8g00601 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Rops8g00601 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 139 IPR001266 GO:0003735|GO:0005840|GO:0006412
Rops8g00601 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Rops8g00601 143 FunFam 40S ribosomal protein S19 2 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00601 Rops-Chr8 12252930 12255047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00601 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 83.916 2.11e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00601 K02966 - gmx:100499800 273.863