Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00599 ATGGCTAAGTCGCACTGTTTGGTTCCTTTGGCCATTTTCATGGTTCTCTTCGTTCAAGCTATGTCAGCAGGCATTGACGGTAAATGGCATCACGCTCATGCAACCTTTTATGGTGACATGCAAGGTGGAGAAACCATGCGGAACCCTTATTGGTTGCTTGTTTTGGTGTACAATGTTGGCAATGCTGGTGATGTTACTAGTGTGAGCATCAAAGGTTCTAAATGTGGCTGGCTTCCTATGTCACGTAGTTGGGGACAGAATTGGGTTACTGGAACTAATTTGATTGGACAAGCCTTGTCATTTCAGGTTACTACAAGTGATGGAAAAATGTTGCAGTTTGACAATGCTGCCTCTCCCAATTGGCAATTCGGACAGACCTACGAGGTCAATAATAATTTTTAG 402 0.4353 MAKSHCLVPLAIFMVLFVQAMSAGIDGKWHHAHATFYGDMQGGETMRNPYWLLVLVYNVGNAGDVTSVSIKGSKCGWLPMSRSWGQNWVTGTNLIGQALSFQVTTSDGKMLQFDNAASPNWQFGQTYEVNNNF* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00599 133 PRINTS Expansin signature 86 107 IPR002963 GO:0009664
Rops8g00599 133 PRINTS Expansin signature 115 131 IPR002963 GO:0009664
Rops8g00599 133 PRINTS Expansin signature 51 72 IPR002963 GO:0009664
Rops8g00599 133 Pfam Expansin C-terminal domain 47 117 IPR007117 -
Rops8g00599 133 SUPERFAMILY PHL pollen allergen 48 128 IPR036749 -
Rops8g00599 133 Gene3D - 40 133 IPR036749 -
Rops8g00599 133 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 50 129 IPR007117 -
Rops8g00599 133 PANTHER EXPANSIN-A15 47 129 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00599 Rops-Chr8 12238231 12239760 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00599 10 133 Expansin Gene Family AT5G39280 44.800 2.16e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00599 - - tpra:123901862 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00599 8 12238231 12239760 Rops8g00599 8 12238231 12239760 ECH