Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00597 ATGGTTCTCTTCGTACAAGCCATGTCATATGGCCTCGACGGTAACTGGGTCAGCATCAAAGGGTCTAACACTAATTGGCTTCCTATGTCACGCAGTTGGGGACAGAATTGGGGTGTTAGATCTAATTTGTTAGGACAAGCTTTGTCATTTTGGGTGACTACTAGTGATGGTAAAGCATTGGAGTTTGTTAATGTTGTTCCTCCCAATTGGCAATTGGGACAGACCTACCAGGGCAATACAAATTTTTAG 249 0.4337 MVLFVQAMSYGLDGNWVSIKGSNTNWLPMSRSWGQNWGVRSNLLGQALSFWVTTSDGKALEFVNVVPPNWQLGQTYQGNTNF* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00597 82 PANTHER EXPANSIN-A15 16 79 IPR002963 GO:0009664
Rops8g00597 82 Pfam Expansin C-terminal domain 16 67 IPR007117 -
Rops8g00597 82 PRINTS Expansin signature 35 56 IPR002963 GO:0009664
Rops8g00597 82 PRINTS Expansin signature 64 80 IPR002963 GO:0009664
Rops8g00597 82 PRINTS Expansin/Lol pI family signature 26 40 IPR007118 GO:0005576
Rops8g00597 82 PRINTS Expansin/Lol pI family signature 64 78 IPR007118 GO:0005576
Rops8g00597 82 SUPERFAMILY PHL pollen allergen 15 78 IPR036749 -
Rops8g00597 82 Gene3D - 3 82 IPR036749 -
Rops8g00597 82 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 1 78 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00597 Rops-Chr8 12206594 12207461 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00597 17 82 Expansin Gene Family AT1G20190 57.576 7.26e-20 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00597 - K20628 mnt:112090940 108.997