Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00572 ATGGCATTCTTCAATAAAATTGGAAACCTACTCAAGAATTCTGCTGTCAAGCACATCAATCATGATTTTTCTGTGTCCACTCCTTCGTTATTCCAGGCAATTAGATCCATGTCATCTGCAAAGGTTTTTGTTGGAGGTATTTCATTTAGCACTGATGATATGAGTCTTCGAGAAGCTTTTGCTCGCTATGGAGAAGTAATTGATGCAAGGGTTATTATGGATCGTGATACGGGCAGGTCTAGAGGTTTTGGCTTCATAACTTTCGCAACAAGTGAGGATGCATCTTCTGCCATTCAGGGCATGGATGGCCAGGATCTTCATGGTCGGAGGATTCGGGTTAATCATGCTACAGAAAGGTCACGTCCAGGGTTTGGTGGTGGTGGATATGGTGGCGGTGGATATGGTGGTGGTGGCTATGGTGGCGGTGGCTATGGCGGCGGCGGTGGCGGTGGCTATAGAGGTAATGATAACAACAGGGGTGAAAGCTATGGAAATAGTGGTTATGGTGTCACAGGAAACTATGGCAGTGGCAATACTGAAACTAGCTTCACAGGTGGTGGTTACCAATTCAATGAAAATTCCGGTGGAGATCTTGGCTCTGCTACCGGGGAACGCAGCAGCAACTCTGGTTTGGGATATGATGGTCAATTTGGTAGCAACCAAAATGATAGAACAGGTGCAGACAATGATGAATTCATGGAGCCACTTGAAGACAATCATGTGGGGGAGAACAATGATGAACCTGATGACCATGCTCAGACCAGGAGGTGA 771 0.463 MAFFNKIGNLLKNSAVKHINHDFSVSTPSLFQAIRSMSSAKVFVGGISFSTDDMSLREAFARYGEVIDARVIMDRDTGRSRGFGFITFATSEDASSAIQGMDGQDLHGRRIRVNHATERSRPGFGGGGYGGGGYGGGGYGGGGYGGGGGGGYRGNDNNRGESYGNSGYGVTGNYGSGNTETSFTGGGYQFNENSGGDLGSATGERSSNSGLGYDGQFGSNQNDRTGADNDEFMEPLEDNHVGENNDEPDDHAQTRR* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00572 256 SMART rrm1_1 41 114 IPR000504 GO:0003723
Rops8g00572 256 MobiDBLite consensus disorder prediction 227 256 - -
Rops8g00572 256 MobiDBLite consensus disorder prediction 183 226 - -
Rops8g00572 256 SUPERFAMILY RNA-binding domain, RBD 25 150 IPR035979 GO:0003676
Rops8g00572 256 Gene3D - 20 135 IPR012677 -
Rops8g00572 256 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 196 - -
Rops8g00572 256 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 21 138 - -
Rops8g00572 256 MobiDBLite consensus disorder prediction 183 256 - -
Rops8g00572 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Rops8g00572 256 PRINTS Eggshell protein signature 36 52 - -
Rops8g00572 256 PRINTS Eggshell protein signature 195 213 - -
Rops8g00572 256 PRINTS Eggshell protein signature 138 153 - -
Rops8g00572 256 PRINTS Eggshell protein signature 163 173 - -
Rops8g00572 256 CDD RRM2_NsCP33_like 41 116 - -
Rops8g00572 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00572 Rops-Chr8 11707296 11710987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00572 30 126 C2H2 Transcription Factor Family AT2G19380 35.052 3.36e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00572 K12741 - gmx:100807155 333.954