Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00568 ATGCCGCAAGTGGAAAGATCTTTGTGGATTGTGCTGTTGATCATTTTGGTCACGATCACAACAGAGAATGACCTTATATGGAATCGGGTCTGCTTGGTTGGTGAATCCTGGCCAGACGGCGAGGAGTGCGAGCAATGGGGGGCTCACTTCATACCTATTGGAGGCACTTGTGGACAGTCAGATCATGGTTCCCAATCTGTTGTTCTCTCTGGTGGTTACGTTGACGATGAAGATCATGGAGAATGGTTTCTCTACACTGGGAAGCACGCGTTGCTTCATGCCGCAGCGCGTCCTTGGGCAACAAGGCCCCCAAGTTAG 318 0.5094 MPQVERSLWIVLLIILVTITTENDLIWNRVCLVGESWPDGEECEQWGAHFIPIGGTCGQSDHGSQSVVLSGGYVDDEDHGEWFLYTGKHALLHAAARPWATRPPS* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00568 105 Gene3D - 28 97 IPR036987 -
Rops8g00568 105 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 19 88 IPR045134 -
Rops8g00568 105 Pfam SAD/SRA domain 32 90 IPR003105 -
Rops8g00568 105 ProSiteProfiles YDG domain profile. 26 105 IPR003105 -
Rops8g00568 105 SUPERFAMILY PUA domain-like 32 90 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00568 Rops-Chr8 11683203 11683520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00568 19 87 C2H2 Transcription Factor Family AT5G39550 66.667 2.01e-26 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00568 K10638 - gmx:100801535 117.472