Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00567 ATGGAGCAAAGGCAGATCTTTGTTCATGTTGTGATTTTCTTGTTCATGATCCTACTTAGAGCAAGTTATGCTGAAGGAGGAGGAGAAGAAGCTGACAGGATTTTGGAACTCCCAGGGCAACCTAAGGTGTCCTTTCAACAGTTCTCTGGCTATGTTACTGTCAACAAGGTTGCTGGTAGAGCTCTCTTTTACTGGCTCACTGAAGCTGCCCAAAATCCTCTCACCAAACCCCTTGTCATTTGGCTCAATGGAGGTCCAGGTTGTTCATCAGTGGCATATGGAGCATCTGAAGAGATTGGTCCATTTAGAATAAACAAAACAGCTTCTGGACTATACATTAACAAGTTCTCATGGAACACAGTGGCCAACCTCTTATTCTTGGAAGCTCCGGCAGGAGTTGGCTTCTCCTACACCAACCGTTCCTCCGATCTCCTCGACACCGGCGACCGCCGCACCGCCAAAGACTCGCTCGAATTTGTGATCCAATGGCTAGAAAGATTCCCACGTTATAAGAATAGGGAGCTTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTTCCTCAATTAGCTAAGGAAATCATAACCTATAACACAAAAACCAAGCACCCCATCAATCTCAAGGGAATAATGGTTGGAAATGCAGTCACGGACAACTATTATGATAACTTGGGTACAGTGACGTATTGGTGGAGCCATGCTATGATCTCTGATCAAACATACAGACAACTCATTAGCACGTGTGATTTTCACAGGCAGAAGGAATCCGATGAATGTGAATCTTTATATAGCTATGCCATGGATCAAGAGTTTGGCAACATTGATCAATATAACATCTATGCACCACCATGCAACAATTCTGATGGAAGCTCCACCACACGCCACAACATTCGGTTACCTCATCATCCCCGTCCGGCTTTTAGGAAACTTTCTGGTTATGATCCATGTACGGAAAAGTATGCAGAGATTTACTATAATAGGCCAGATGTTCAGAGAGCACTCCATGCTAACACAACTGGCATTTCTTATAAATGGACTGCTTGCAGTGAGGTTTTGAATCGAAACTGGAATGATACAGATGTATCTGTTCTTCCAATTTATAGAGAATTGATGGCTCATGGGACAAGAGTTTGGGTGTTCAGTGGGGATGTTGACTCAGTGGTGCCAGTTACAGCAACTAGATATGCCCTTGCACAACTGAAGTTGGAAACTAAAATACAATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACAGAGGTGTATGAAGGGCTAACATTTGCCACTGTGAGAGGAGCAGGCCATGAAGTTCCATTATTCAAGCCAAGAGCAGCCCTTCAGTTATTCAAATCATTCCTTGTAGGAAAGCCTCTTCCAAAGTCCTAA 1392 0.4382 MEQRQIFVHVVIFLFMILLRASYAEGGGEEADRILELPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEAAQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVANLLFLEAPAGVGFSYTNRSSDLLDTGDRRTAKDSLEFVIQWLERFPRYKNRELYITGESYAGHYVPQLAKEIITYNTKTKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLISTCDFHRQKESDECESLYSYAMDQEFGNIDQYNIYAPPCNNSDGSSTTRHNIRLPHHPRPAFRKLSGYDPCTEKYAEIYYNRPDVQRALHANTTGISYKWTACSEVLNRNWNDTDVSVLPIYRELMAHGTRVWVFSGDVDSVVPVTATRYALAQLKLETKIQWYPWYVKNQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLVGKPLPKS* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00567 463 Gene3D - 363 457 - -
Rops8g00567 463 FunFam Carboxypeptidase 363 457 - -
Rops8g00567 463 Pfam Serine carboxypeptidase 39 456 IPR001563 GO:0004185|GO:0006508
Rops8g00567 463 FunFam Carboxypeptidase 312 460 - -
Rops8g00567 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Rops8g00567 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Rops8g00567 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185|GO:0006508
Rops8g00567 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Rops8g00567 463 ProSitePatterns Serine carboxypeptidases, histidine active site. 427 444 IPR033124 GO:0004185
Rops8g00567 463 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Rops8g00567 463 Gene3D - 316 353 - -
Rops8g00567 463 Gene3D alpha/beta hydrolase 28 286 IPR029058 -
Rops8g00567 463 FunFam Carboxypeptidase 28 286 - -
Rops8g00567 463 SUPERFAMILY alpha/beta-Hydrolases 30 461 IPR029058 -
Rops8g00567 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 444 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00567 Rops-Chr8 11665024 11669910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00567 321 460 Calmodulin-binding Proteins AT2G22960 31.206 2.34e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00567 K16297 - gmx:100807680 879.011