Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00564 ATGTTTTCATCATCATCATCTTCTTCTTCTACTACTACTACTTCAGTGATCAAATGGAGCTTCTTTCACAAACCCATAACCCTTTTGCACGTTCTTCAACTATGCTCTCTCTTCTGGGTCCTCTTCTTCTCCAGAAACGGTGTCGTTTTAGCAGATTCCGACGAATCAGTGCTTCTTCAGCTCAAGAACTCACTCTCTGACCCTTCAGGGTTACTCTCTAGCTGGGACCCCACAAAGGGTTCGAGCCACTGTTCATGGTTCGGTGTTTTATGTGACTCGGGTTCGAACCGTGTTGTTGCGATCAATGTTACTGGTAACGGAGGTAACAGAAAAAACCCTTCTTTGTGTTCCGATTTCACTGAATTTCCTCTCTATGGTTTTGGAATTAGGAGAAGCTGTGAAGGTAGTAAAGGGTCATTGTTTGGAAAGTTTTCACCTTTGTTCAGTGAACTCACTGAGCTTAGGGTTTTATCCCTTCCCTTTAATGGTTTTGAGGGTGTGATTCCTGATGAAATTTGGGGTATGGAAAAATTGGAGGTTCTTGATCTTGAGGGGAATTTGATAAGTGGATATCTTCCTGTAAGGTTTAGTGGGTTGAGGAATTTGAGGGTTCTTAATCTAGGGTTTAATAGGATTGTTGGGGAGATACCTAATTCATTGTCAAGTGTTGGAAGTTTGCAGATTTTGAATTTGGCCGGAAATGGCATCAATGGGTCTGTTCCTGGTTTTGTTAGTAGGCTGAGAGGGGTGTATCTGTCTTTTAACTTGCTTGGTGGTGTTATTCCCCAAGAGATAGGGGATCATTGTGGGAGCCTTGAGCATTTGGATTTGTCTGGTAATTTCTTAGTTCAAGGGATACCAGGAAGTTTGGGGAATTGTAGTGAGTTGAGGACTCTTTTGCTGTATTCGAATATATTGGAGGATGTTATTCCTGCTGAGATTGGTAAGCTCAAGAAGCTTGAGGTGTTGGATGTTTCGCGGAATACTCTTGGTGGGTTGGTACCTCGTGAGCTTGGGGATTGTACGGATTTGTCTGTTCTTGTGTTGTCGAATCTTTTTAATCCACTTCCGGATGTCAATGGTACAGAAAGGGACTCTTCGATGGAGCAGTTGGATTCTACAATTGATGAATATAATTATTTTGAAGGTCCAATTCCTGAGGAAATTATGAGCCTTCCTAAGCTGAGAATACTGTGGGCACCAAGGGCAAATCTGGAAGACAGTTTTCCAAGTAGTTGGGATGCTTGTGATAGCTTGGAGATGCTAAATTTGGCTCAAAATGATTTCACTGGGGATTTTCCTAATCAGCTTAGTCGCTGCAAAAAGCTTTATTTTCTTGATTTAAGCTCAAACAACCTTACTGGAAAGCTCGCTGAAGAACTTCCTGTTCCCTGTATGACGGTTTTTGATGTTAGTGGGAATGTCTTATCTGGCCCAATTCCTGAATTCTTTGTTGACGCGTGTCCCTCAGTCCCTTTCTGGAATGGAAATCTGTTTGAAAACGACAATATGGCTCTTCCGTACGAATCCTTTTTTGCATCACAGGTTCTTGGAGGGCCCCTTTTGTCTTCACTTGGAGAAGTTGGCCGTTCCATTTTTCACAACTTTGGTCAAAACAATTTTATTGGCATGGAGTCACTGCCAATAGCGCGTGACAGATTGGGCAAGGGATTTGTTTATGCAATTATTGTTGGAGAAAATGACCTGACCGGACCGTTTCCGACTAATTTATTTGAGAAATGTGATGGATTAAATGCGCTGCTTTTAAATGTGAGTTATACTAGGTTATCTGGTCAGATTCCTTCCAAGTTTGGCGGAATGTGCAGATCATTGAAATTCTTGGATGCATCTGGAAATCAGATTAAAGGGTCAATCCCCCCGGGTTTAGGGGACTTGGTGTCTCTTGTTGCTCTGAACCTCAGTCGGAACCATTTACAAGGTCAGATTCCCACCAGCCTTGGCCAGATGAAGGATCTGAAGTTTCTCTCTTTGGCTGACAATAATTTAAGTGGCTCCATTCCTACAAGCCTTGAGCAGTTGTACTCTCTAGAAGCCTTGGATCTCTCTTCAAATTCTCTCACTGGTGAAATTCTTAAAGGTATTGGGAACTTGAGAAATCTGACTGTTGTTTTGCTCAACAATAACAAACTCTCTGGACAGATTCCTGCTGGTTTGGCAAATGTCATTACACTGTCAGCATTCAATGTGTCATTCAATAACTTATCTGGATCCTTGCCATCAAATAGTAACTTGATAAAATGCAGCAGTGCTGTTGGGAATCCGTTTTTACATTCTTGCAATGGAGTTTCTCTTACTGTGCCATCAGCAGATCAACATGGGCTGGTTGATAATTCTAATTCTGATACTGCTGCACCACCAGAAGCTATGGGCAAAAAGAGTGGGAATGGTTTCAATTCTATTGAAATAGCATCTATAACTTCTGCATCTGCCATTGTTTCTGTTCTTCTAGCCCTAATTATCCTTTTCATTTATACACGGAAGTGGAAGCCAAAGTCCAGGGTTGTTGGGTCCACGAGGAAAGAAGTTACAGTGTTCACTGACATTGGGGTTCCATTGACATTTGAAAATGTTGTCCATGCCACTGGAAATTTCAATGCAAGCAACTGCATTGGGAATGGAGGATTTGGAGCAACCTATAAGGCAGAGATATCACCAGGAAACTTGGTGGCAATAAAACGTCTGGCAGTTGGAAGATTCCAAGGTGTTCAACAATTCCATGCAGAGATCAAGACCCTAGGAAGGCTTCACCATCCGAATCTTGTCACTCTGATTGGTTATCATGCTAGTGAGACTGAGATGTTTCTCATATACAACTATCTGCCAGGTGTAGCATGGGCATGCATGTTACTGAGGCAAGGCCAGGCAAAGGATTTCTTCACTGCTGGCTTATGGGATGCAGGACCTGCAGATGATTTGGTTGAGGTTCTACACTTAGCTGTTGTGTGTACTGTTGACTCTCTCTCTACCAGACCTTCAATGAAACATGTTGTGAGGCGGCTTAAGCAACTCCAACCACCATCATGTTAG 3048 0.4252 MFSSSSSSSSTTTTSVIKWSFFHKPITLLHVLQLCSLFWVLFFSRNGVVLADSDESVLLQLKNSLSDPSGLLSSWDPTKGSSHCSWFGVLCDSGSNRVVAINVTGNGGNRKNPSLCSDFTEFPLYGFGIRRSCEGSKGSLFGKFSPLFSELTELRVLSLPFNGFEGVIPDEIWGMEKLEVLDLEGNLISGYLPVRFSGLRNLRVLNLGFNRIVGEIPNSLSSVGSLQILNLAGNGINGSVPGFVSRLRGVYLSFNLLGGVIPQEIGDHCGSLEHLDLSGNFLVQGIPGSLGNCSELRTLLLYSNILEDVIPAEIGKLKKLEVLDVSRNTLGGLVPRELGDCTDLSVLVLSNLFNPLPDVNGTERDSSMEQLDSTIDEYNYFEGPIPEEIMSLPKLRILWAPRANLEDSFPSSWDACDSLEMLNLAQNDFTGDFPNQLSRCKKLYFLDLSSNNLTGKLAEELPVPCMTVFDVSGNVLSGPIPEFFVDACPSVPFWNGNLFENDNMALPYESFFASQVLGGPLLSSLGEVGRSIFHNFGQNNFIGMESLPIARDRLGKGFVYAIIVGENDLTGPFPTNLFEKCDGLNALLLNVSYTRLSGQIPSKFGGMCRSLKFLDASGNQIKGSIPPGLGDLVSLVALNLSRNHLQGQIPTSLGQMKDLKFLSLADNNLSGSIPTSLEQLYSLEALDLSSNSLTGEILKGIGNLRNLTVVLLNNNKLSGQIPAGLANVITLSAFNVSFNNLSGSLPSNSNLIKCSSAVGNPFLHSCNGVSLTVPSADQHGLVDNSNSDTAAPPEAMGKKSGNGFNSIEIASITSASAIVSVLLALIILFIYTRKWKPKSRVVGSTRKEVTVFTDIGVPLTFENVVHATGNFNASNCIGNGGFGATYKAEISPGNLVAIKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHASETEMFLIYNYLPGVAWACMLLRQGQAKDFFTAGLWDAGPADDLVEVLHLAVVCTVDSLSTRPSMKHVVRRLKQLQPPSC* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00564 1015 SUPERFAMILY Protein kinase-like (PK-like) 854 949 IPR011009 -
Rops8g00564 1015 ProSitePatterns Protein kinases ATP-binding region signature. 877 899 IPR017441 GO:0005524
Rops8g00564 1015 Pfam Leucine rich repeat N-terminal domain 51 92 IPR013210 -
Rops8g00564 1015 PRINTS Leucine-rich repeat signature 680 693 - -
Rops8g00564 1015 PRINTS Leucine-rich repeat signature 443 456 - -
Rops8g00564 1015 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 247 357 - -
Rops8g00564 1015 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 835 946 - -
Rops8g00564 1015 SUPERFAMILY RNI-like 142 496 - -
Rops8g00564 1015 SUPERFAMILY L domain-like 563 767 - -
Rops8g00564 1015 Pfam Leucine Rich Repeat 271 293 IPR001611 GO:0005515
Rops8g00564 1015 Pfam Leucine Rich Repeat 201 222 IPR001611 GO:0005515
Rops8g00564 1015 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 366 457 - -
Rops8g00564 1015 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 247 950 - -
Rops8g00564 1015 Gene3D Phosphorylase Kinase; domain 1 833 946 - -
Rops8g00564 1015 SMART LRR_typ_2 704 727 IPR003591 -
Rops8g00564 1015 SMART LRR_typ_2 317 341 IPR003591 -
Rops8g00564 1015 SMART LRR_typ_2 632 656 IPR003591 -
Rops8g00564 1015 SMART LRR_typ_2 244 268 IPR003591 -
Rops8g00564 1015 SMART LRR_typ_2 269 293 IPR003591 -
Rops8g00564 1015 SMART LRR_typ_2 175 198 IPR003591 -
Rops8g00564 1015 SMART LRR_typ_2 199 223 IPR003591 -
Rops8g00564 1015 SMART LRR_typ_2 680 700 IPR003591 -
Rops8g00564 1015 Pfam Leucine rich repeat 635 693 IPR001611 GO:0005515
Rops8g00564 1015 ProSiteProfiles Protein kinase domain profile. 871 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00564 1015 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 529 771 - -
Rops8g00564 1015 Gene3D Ribonuclease Inhibitor 366 556 IPR032675 -
Rops8g00564 1015 Gene3D Ribonuclease Inhibitor 557 779 IPR032675 -
Rops8g00564 1015 Gene3D Ribonuclease Inhibitor 245 365 IPR032675 -
Rops8g00564 1015 Gene3D Ribonuclease Inhibitor 51 244 IPR032675 -
Rops8g00564 1015 Pfam Protein kinase domain 874 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00564 Rops-Chr8 11577089 11580969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00564 31 949 Receptor kinase-like Gene Family AT3G02130 58.298 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Rops8g00564 Pkinase 2.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00564 - - gmx:100803891 1476.84