LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g00562	ATGAGAAGAAACCTGACCCAGTTGATAACTTCACAAACCCCACTCTTCTCACACACCCATCATCTCTCTCTTCATCTTCACGATCACACCCTTCACCAACAACACATTCCTCAGATGGCCTTGCAATCAGCTACTCATCCAACTACGCCCAATGCCCAAGTGGTTGGTAATGCATTTGTTGAGCAGTATTACCATATTCTTCACCATTCACCAGATTTGGTCTATCGTTTTTATCAGGACTCTAGTGTGATAAGCCGTCCTGATTCCAATGGTATGATGACATCAGTTACTACCATGAAAGGCATTAATGAGAAGATTCTTTCACTAAATTTCAAGGAATTTAAAGCGGAGATAAAGACTGCAGATGCTCAAAAATCACATGAAAAAGGAGTTACTGTACTGGTGACTGGATGCTTGACTGGCAAGGATAACTTGAGAAGAAATTTTGCACAGTCATTCTTTCTTGCTCCACAAGACAATGGCTACTTTGTTCTGAATGATGTTTTTAGGTATGTAGAAGACCATGAACCATCAGAACTGCATCCAGTTAATCGAGATGAAGATGCAGCTGCTGTTACTGTAACCCCAGAACCAGAGCCCAGTCATGTTCCTTCTGCGCCAGACCCCACAAATTCGCATGTGAAGGAAGGCCAAGTTGTTTCTGAGAATGCTTATGAGCCATCTAACCATCATGAGATACAGATAGAAAATGAAGAAATTGTAGAACCTCATTTTCAGTCAAATGGGAATGATGATCCTCAGGCCACGGAACTGGCTTCTTCAGCTCAAGAGGATGCTCCAAAGAAGTCTTATGCATCAATTGTGAAAGTCCCAAAAGGGATTTTGGGATCAGCTAAAGTCTATGTGCCTACTAATACTGTAAAGACAACGCCCAACAAAACTGAGAGTGAGGTAATTGAATCAGTACAATCTGCTGCAGCGCCTGAAGCAGCACCAGATAGTGTTGGCAACCCTGAAAGTAGTGATACTCATGAGGAAGTTGAGGGGCACTCCATTTACATTCGAAACTTGCCCTTAAATGTGACGGTTGCTCAGTTGGAAGTGGAGTTTAAGAAATTTGGACCCATCAAGCAGGGAGGCATCCAAGTCAGAAATAATAAGCAGCAGGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTCTAAACTCAATGAATAGTGCAATTCAGGCTTCACCTATTACTATTGGGAAGCGTCAAGCTGTAGTTGAGATAAAGAGAACCACTACTCGAGTTGGCAGTGGCAGTACTGGAAGGGCTAGAATTCCACCCGGAAGAAGTGGATTTCGAAATGACTCTTTCAGGGGTCGTGGGAACTATGGCGGTGGGCGGGGCTATGGCCGAAATGATTATGGAAACCGTGGCGACTTTTCCGGTAGAGGTCGTGGTCCTGGTGGTTATGGAGAAGGTTTTCACCAAGGGAGAGGGAGAGGTGGCCGGTCTAGTACACTAAAAAACAGTGCTGTTTCCAACTGA	1494	0.4404	MRRNLTQLITSQTPLFSHTHHLSLHLHDHTLHQQHIPQMALQSATHPTTPNAQVVGNAFVEQYYHILHHSPDLVYRFYQDSSVISRPDSNGMMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSHEKGVTVLVTGCLTGKDNLRRNFAQSFFLAPQDNGYFVLNDVFRYVEDHEPSELHPVNRDEDAAAVTVTPEPEPSHVPSAPDPTNSHVKEGQVVSENAYEPSNHHEIQIENEEIVEPHFQSNGNDDPQATELASSAQEDAPKKSYASIVKVPKGILGSAKVYVPTNTVKTTPNKTESEVIESVQSAAAPEAAPDSVGNPESSDTHEEVEGHSIYIRNLPLNVTVAQLEVEFKKFGPIKQGGIQVRNNKQQGYCFGFVEFLSLNSMNSAIQASPITIGKRQAVVEIKRTTTRVGSGSTGRARIPPGRSGFRNDSFRGRGNYGGGRGYGRNDYGNRGDFSGRGRGPGGYGEGFHQGRGRGGRSSTLKNSAVSN*	498

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g00562	497	Pfam	Nuclear transport factor 2 (NTF2) domain	55	171	IPR002075	-
	Rops8g00562	497	MobiDBLite	consensus disorder prediction	415	497	-	-
	Rops8g00562	497	MobiDBLite	consensus disorder prediction	244	267	-	-
	Rops8g00562	497	ProSiteProfiles	Nuclear transport factor 2 domain profile.	55	171	IPR018222	-
	Rops8g00562	497	CDD	NTF2	51	173	IPR018222	-
	Rops8g00562	497	SUPERFAMILY	RNA-binding domain, RBD	322	421	IPR035979	GO:0003676
	Rops8g00562	497	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	337	414	IPR000504	GO:0003723
	Rops8g00562	497	MobiDBLite	consensus disorder prediction	298	330	-	-
	Rops8g00562	497	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	339	397	IPR000504	GO:0003723
	Rops8g00562	497	SUPERFAMILY	NTF2-like	51	172	IPR032710	-
	Rops8g00562	497	Gene3D	-	43	176	-	-
	Rops8g00562	497	SMART	rrm1_1	338	410	IPR000504	GO:0003723
	Rops8g00562	497	Gene3D	-	295	427	IPR012677	-
	Rops8g00562	497	PANTHER	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	51	468	IPR039539	-
	Rops8g00562	497	MobiDBLite	consensus disorder prediction	244	268	-	-
	Rops8g00562	497	FunFam	Nuclear transport factor 2 family protein	46	175	-	-
	Rops8g00562	497	MobiDBLite	consensus disorder prediction	195	214	-	-
	Rops8g00562	497	CDD	RRM_SF	339	397	-	-
	Rops8g00562	497	FunFam	Ras GTPase-activating protein-binding protein 1	325	455	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g00562	Rops-Chr8	11553687	11562046	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g00562	304	418	Eukaryotic Initiation Factors Gene Family	AT2G36660	32.203	3.29e-06	47.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g00562	K24983		-	gmx:100805494	663.299