Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00555 ATGACTTCAATCAATGGTCGTAAAGCAAGTGAGATCTTCCAAGGCCAAGCTCTCTTGTACAGACACATTTATGCCTTCATAGACTCTATGTGTCTAAAATGGATGGTTGAGCTTGGCATCCCAAACATCATCCACAACCATGGCAAACCCATTACTCTTGAAGAGTTGGTCTCAATCTTGCAAGTTCCATCAGCAAAAGTTGGTAATGTGCAGCGGATCATGCGCTACCTCACACACAATGGATTCTTTGAGATAGTAAGAATCCATGACAATGGAGAAGAAAAGGAAGCATATGCTCTCACTGCTGCATCAGAGCTCCTTGTCAAAGGCAATGACCTCTGTTTAGCTCCAATGGTTGAGTGTGTTCTTGACCCAACTCTTTCAGGTTCATACCATCTGTTGAAGAAGTGGATCTATGAGGAAGATCTCACTCTATTTGGTATCTCCTTAGGATCCCATTTCTGGGAATTTCTCAACGAAAACCCTGATTATAACAGGTCATTCAATGAGGCCATGGCCAGTGATTCTCGAATGATAAACTTGGCATTGAGGGATTGCAATTCTGTCTTTGAGGGAGTGGAATCCATTGTGGATGTAGGTGGTGGAACTGGAACCACAGCCAAGATTCTGTGTGAGACATTTCCTAAGTTGAAATGTATAGTGTTTGATCGTCCACAGGTTATAGAAAACTTGTCTGGAAACAACAATTTGAGTTATGTTGGTGGGGACATGTTCGTATCTATTCCTAAGGCTGATGCAGTTCTACTTAAGTGGATTTTACATAATTGGACAGATAAAGATTGCAGAAAGATATTGGAAAAATGTAAAGAAGCTATTTCAAGTGATGGGGAAAGAGGAAAAGTGATTATCATAGATGTGGTGATAAATGAAAAACAAGATGGGCATGAAATCACCGGAACAAAGCTCCTTATGGATGTAAACATGGCATGCCTCAATGGGAAAGAGAGAACTGAAGAAGAATGGAAGAAACTCTTCTTGGAAACAGGCTTCAGAGACTACAAAATATCTCCTTTGACCGGATTTTTGTCTCTTATTGAGGTCTATCCTTAA 1071 0.4062 MTSINGRKASEIFQGQALLYRHIYAFIDSMCLKWMVELGIPNIIHNHGKPITLEELVSILQVPSAKVGNVQRIMRYLTHNGFFEIVRIHDNGEEKEAYALTAASELLVKGNDLCLAPMVECVLDPTLSGSYHLLKKWIYEEDLTLFGISLGSHFWEFLNENPDYNRSFNEAMASDSRMINLALRDCNSVFEGVESIVDVGGGTGTTAKILCETFPKLKCIVFDRPQVIENLSGNNNLSYVGGDMFVSIPKADAVLLKWILHNWTDKDCRKILEKCKEAISSDGERGKVIIIDVVINEKQDGHEITGTKLLMDVNMACLNGKERTEEEWKKLFLETGFRDYKISPLTGFLSLIEVYP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00555 356 Gene3D Vaccinia Virus protein VP39 108 356 IPR029063 -
Rops8g00555 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 356 IPR016461 GO:0008168
Rops8g00555 356 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Rops8g00555 356 Pfam O-methyltransferase domain 131 338 IPR001077 GO:0008171
Rops8g00555 356 PANTHER O-METHYLTRANSFERASE 15 341 IPR016461 GO:0008168
Rops8g00555 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
Rops8g00555 356 Gene3D - 1 107 IPR036388 -
Rops8g00555 356 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Rops8g00555 356 FunFam Coniferyl alcohol 9-O-methyltransferase 2 107 - -
Rops8g00555 356 FunFam O-methyltransferase ZRP4 109 356 - -
Rops8g00555 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 355 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00555 Rops-Chr8 11513193 11514585 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00555 25 342 Monolignol Biosynthesis Gene Families AT5G54160 34.154 1.15e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00555 K22588 K13262 ag:AAC49926 586.26