Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00548 ATGAAAATCGTAGAAGTTTTCAGAGTAGCACCAGCTTTGGTATCAGAGGAGTTACCTACTCAAACATCGCTTCCTCTTACCTTCTTTGACATACTATGGCTAAGGTTACCTCCTGTTCAACGTGTTTTCTTCTATGAATTCCCTCACCCAACCCCACTTTTCTTTGATACCCTTCTTCCCAAACTCAAAAGTTCCCTTTCTCTTGCACTTGGTTACTTCTATCCTCTTTCTGGCCACCTTACTTGGCCCATTGAATCCAACAAACCCATCATCAATTACACTAAAGGTGACACCGTTTCCCTCTCTGTGGCTGAATCTGATGCTGATTTCAACCACTTAGCAGGTACTGATCTATGTGAAGCTAAAAAATATCACCATCTTTTACCACAGTTGACCATATCCCATGATCAAGCTACTGTGTTGGCTCTCCAGGTCACTCTATTTCCAAACTCTGGATTTTCAATTGGAATCACCTCACACCATGCTGTTCTAGATGGCAAAACTTCAACATCTTTCATCAAATCATGGGCTTATCTTTGTAGAGAATCACCTTCTTTGCCACCTGAATTGATTCCTTTCTATGACAGGGAAGTGGTTGAAGACCCAAGTGAATTAGAGGCAAAATATTTGAGTGATTGGTTGAAGCAGGGTGGACCCAACAACAGAAGCCTCATGGTTTGGGATCTCCAAGCTCCAGAAGAGTCAACTAGAGGCTTATTTCACTTGTCTCGCTCAGATATTGAAAAGCTCAAACAAAGTGTAGTGTCCAAGCAAAAAGGAAAGAACCTTCATTTGTCAACTTTGGTTTTATCTGTTGCCTACGCATTGGTTTGCAGAGTGAAAGCAGAGGAAATTGAAAACAAGGGAATTCTTTTGGCTTTGAATATTGACTGCAGGGCTCGCTTAGAGCCAGCTCTTCCTCCAACATATTTTGGAAATTGTGTTGGTGCCAGACTTGCAATTGCTGAAACAAGAGAATTATTGGGAGAAGATGGACTAATTGTGGCTGTGGAAGCACTGAATGAAGCCTTGGAAACTCTGAAGGATGGAGTGCTGAGTGGAGCAGAAAATTGGTCATCATGGTTGCTTGATGGTTTTTTCACTGATGTCAAGACAGTTGGTGTTGCTGGGTCACCCAGGTTTGATGCTTACAACAATGATTTTGGTTGGGGAAGACCAAAGAAGGTGGAGATAGCATCTATAGACAGAACTGGAGCATTTTGTCTTTCAGATAGCAGAAATGGTGATGGAGTGGAGATAGGTTTTGTGTCCAATAAAAGAGCAATGGAGACCTTTGCTTCTCTCTTTGTCAAAGACCTTGAATCTTGA 1329 0.4199 MKIVEVFRVAPALVSEELPTQTSLPLTFFDILWLRLPPVQRVFFYEFPHPTPLFFDTLLPKLKSSLSLALGYFYPLSGHLTWPIESNKPIINYTKGDTVSLSVAESDADFNHLAGTDLCEAKKYHHLLPQLTISHDQATVLALQVTLFPNSGFSIGITSHHAVLDGKTSTSFIKSWAYLCRESPSLPPELIPFYDREVVEDPSELEAKYLSDWLKQGGPNNRSLMVWDLQAPEESTRGLFHLSRSDIEKLKQSVVSKQKGKNLHLSTLVLSVAYALVCRVKAEEIENKGILLALNIDCRARLEPALPPTYFGNCVGARLAIAETRELLGEDGLIVAVEALNEALETLKDGVLSGAENWSSWLLDGFFTDVKTVGVAGSPRFDAYNNDFGWGRPKKVEIASIDRTGAFCLSDSRNGDGVEIGFVSNKRAMETFASLFVKDLES* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00548 442 Gene3D - 1 225 IPR023213 -
Rops8g00548 442 Pfam Transferase family 15 434 - -
Rops8g00548 442 PANTHER - 2 441 - -
Rops8g00548 442 Gene3D - 231 442 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00548 Rops-Chr8 11404292 11405627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00548 42 432 Monolignol Biosynthesis Gene Families AT5G48930 26.733 7.37e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00548 - - gmx:102660160 700.664