Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00545 ATGAAAACCATTGAAGTTTTCAGAGTAGCACCGACTTTGGTCTCAGAAGAGTTACCTACTCAAACATTGCTTCCTCTCACCTTCTTTGACATACTATGGTTAAGGTTACCTCCTGTTCAACGTCTTTTCTTCTATGAATTCCCTCACCCAACCCCACTCTTCTTTGATACCCTTCTTCCCAAACTCAAATGTTCCCTTTCTCTTGCACTTGGTTACTTCTACCCTCTTGCTGGCCACCTTACTTGGCCCCTTGAATCCAACAAACCCATCATCAATTACACCAAAGGTGACACCGTTTCCCTCACTGTGGCTGAATCTGATGCTGATTTCAACCATTTAGCAGGTACTGATCTATGTGAAGCTACAAAAAGTCACCATCTTTTACCACAGTTGACCATATCCCATGATCAAGCTACTGTATTGGCTCTCCAGGTCACTCTATTTCCAAATTATGGATTTTCCATTGGTGTTACCTCACACCATGCTGTTCTAGATGGCAAAACTTCAACATCTTTTATCAAATCATGGGCTTATCTTTGTAGAGAATCAACCTCTGCTTTGCCACCTGAATTGAGTCCTTTCTATAACAGGGAAGTAATCAAAGACCCCAATGAGTTAGAGGCAAAATATGTGAGTGACTGGTTAAAACATGGTGGACCCAACAACAGAAGCCTCAAGGTTTGGGATCTCCAAGTCCCAGAAGAGTCAACTAGAGGGTTATTTCACTTGTCTCGCTCAGATATTGAAAAGCTCAAACAATTTGTAGTCTCCAAACAAAAAGGAAAGAACCTTCACTTGTCAACTTTTGTTCTATCTGTTGCCTATGGATTGGTTTGCAGAGTGAAAGCAGAGGAAATTAAAACCAAGAAAATTCTTTTGGCTTTGAGTATTGATTGCAGGAATCGGTTAGAGCCTCCAGTTCCTCCAACATATTTAGGAAATTGTGTTGGTGGCAGACTTGTAATTGTGGAAACAAGAGAATTATTGGGAGAAGATGGACTAATTGTGGCTGTGGAAGCACTGAGTGAAGCCTTGGAAACTTTGAAGGATGGAGTGCTGAGTGGAGCAGAAGATTGGTCATCATGGTTGCTTGATGGTCTTTTCACTGATGTGAAGACAATTGGCACTGCTGGGTCTCCAAGGTTTGAGGTTTACAACAATGATTTTGGTTGGGGAAGACCAAAGAAGGTGGACATGGCATCGATAGATAGAACTGGGGCATTATGTCTTTCAGACAGCAAAAATGGTGATGGAGTTGAAGTAAGTTTTGTGTCCAATAAAGTAGCAATGGAGACATTTTCTTCTCTCTTTGTCAAAGGCCTTGCAACTTCGGTTTATGTATTACCAGTATAG 1353 0.4146 MKTIEVFRVAPTLVSEELPTQTLLPLTFFDILWLRLPPVQRLFFYEFPHPTPLFFDTLLPKLKCSLSLALGYFYPLAGHLTWPLESNKPIINYTKGDTVSLTVAESDADFNHLAGTDLCEATKSHHLLPQLTISHDQATVLALQVTLFPNYGFSIGVTSHHAVLDGKTSTSFIKSWAYLCRESTSALPPELSPFYNREVIKDPNELEAKYVSDWLKHGGPNNRSLKVWDLQVPEESTRGLFHLSRSDIEKLKQFVVSKQKGKNLHLSTFVLSVAYGLVCRVKAEEIKTKKILLALSIDCRNRLEPPVPPTYLGNCVGGRLVIVETRELLGEDGLIVAVEALSEALETLKDGVLSGAEDWSSWLLDGLFTDVKTIGTAGSPRFEVYNNDFGWGRPKKVDMASIDRTGALCLSDSKNGDGVEVSFVSNKVAMETFSSLFVKGLATSVYVLPV* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00545 450 PANTHER - 2 442 - -
Rops8g00545 450 Gene3D - 232 443 IPR023213 -
Rops8g00545 450 Gene3D - 2 226 IPR023213 -
Rops8g00545 450 SUPERFAMILY CoA-dependent acyltransferases 237 406 - -
Rops8g00545 450 Pfam Transferase family 15 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00545 Rops-Chr8 11361535 11364864 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00545 42 418 Monolignol Biosynthesis Gene Families AT5G48930 26.478 3.15e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00545 - - gmx:100805184 693.73