Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00542 ATGATTAAGAGTTCAAAAGATGCAGATTTTCAATTAAAACAAGAGGGTCATTCAAGTGATGAAAAAGCAAAAGCTTCATCAAGCTTATCAGCACATTGGCCAAGATTGAAGGATCCAAGGATTGTTAGAGTTTCTAGAGCCTCTGGAGGAAAAGACAGACATAGCAAGGTTTGCACAATAAGAGGATTAAGAGATAGGCGTGTGAGGCTTTCAGTACCAACTGCTATCCAACTTTATGATCTTCAAGATAGGTTAGGGCTCAATCAACCTAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCTAAGCATGAAATTGATGAACTCCCACCACTTCCAAATATTCCACCAGGGAACTTCACCTTTAATTATCCTTCTGTTGTTACTTCTAATGAAGCTAGCACCTTTCAGTGGGGAGGTTCAAGTCAAAATTCTATGTGGAAATTAAAGCAAAAAGAAGTTTCAGGAGAAATGGTTAGTGATAAAGCAAATTGGATGAATAGAAGTGAAGAGGATAATAAGCAAGGAAGCAATGAAGGTCCTAGTGCACATGTTTTGCCTAATAATCTCTTACCAAGAGCAAATCATTCTTCATTCCTGGGATTGTTGAATACTATGCCACTTGGTTACCAATGGGAGCCTTCTGGTGATGTTTCTCAATTGGGAAACCATGGATTTACAAATCAAACAGATATGCACAGCATTGATGTTGTACCTTTCCCATCAACATTGTCTTTATCAACTGGGAATTCTCAAATTCTGGTATGTCCTCCAGGAGCAGCAACACAGTCTTATTTCCCTTCACATGTTACAACAGCAATGGACATGGATCAGAGACAAATCAACCACTATCAGATGTTGAATTCAAGTTCTCAAAATCTATTGTCGAATTCTCTCAATCCATCCTTCAGTTTGGCTATGATAACTCCCAAACTTCTTCATTCACCCGACAGCAGTGAAAGCCCTTCACATAAAGACCAAGATTTCCCTCCCAAGTGA 996 0.3926 MIKSSKDADFQLKQEGHSSDEKAKASSSLSAHWPRLKDPRIVRVSRASGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPNIPPGNFTFNYPSVVTSNEASTFQWGGSSQNSMWKLKQKEVSGEMVSDKANWMNRSEEDNKQGSNEGPSAHVLPNNLLPRANHSSFLGLLNTMPLGYQWEPSGDVSQLGNHGFTNQTDMHSIDVVPFPSTLSLSTGNSQILVCPPGAATQSYFPSHVTTAMDMDQRQINHYQMLNSSSQNLLSNSLNPSFSLAMITPKLLHSPDSSESPSHKDQDFPPK* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00542 331 MobiDBLite consensus disorder prediction 317 331 - -
Rops8g00542 331 MobiDBLite consensus disorder prediction 1 22 - -
Rops8g00542 331 MobiDBLite consensus disorder prediction 1 32 - -
Rops8g00542 331 MobiDBLite consensus disorder prediction 312 331 - -
Rops8g00542 331 ProSiteProfiles TCP domain profile. 50 108 IPR017887 -
Rops8g00542 331 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 289 IPR005333 GO:0003700
Rops8g00542 331 Pfam TCP family transcription factor 49 166 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00542 Rops-Chr8 11299069 11300995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00542 33 285 TCP Transcription Factor Family AT3G02150 44.195 9.60e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops8g00542 TCP 1.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00542 - - var:108327895 478.404