Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00540 ATGAGTGGAAAGGGTTTGAAATCCTTGAAAGATGAAAACCCAGATTTGCAGAAGCAGATTGGTTGCATCACTGGTTTTTTTCAGCTCTTTGATCGCCACCGTTTCCTCACAGGCCAACACACCAGTGGCTACATTCAACACAGAACTAATTCAGGTGGAAGCAATAATGACATCAAAAAGCTAAATAGTACAATGCAAAAAACAAAGGCAAAGAATGTGAAGATTGCAAGAGAGAAGCAACAATTCTCCAGAGAGTCATCAATAACTTCTGTATCTTCATCATCATGTTCATCTAGCATGTCATCCCATGAGTTTAACAGAACAATTCAGACAGAATCACCATCAACCAGTCAAATTAGAATTCCACAAAACTCACATTCAGAAGTAGCAATGAAGCAACGTGATACACCATGCCACCAATCCCTTGACTTCTATGATATTGTCAAAGACTCAATGCATAGAGAAGCTCAAGGACTGTCTGTGAAAACTGTAGCTAAAGAGGGAAAGAAGGGTCAGCCTCATCATACCTTGAAACACATAGATTCTCCAAGGCCTTTGCTGTCTAACACAGTCAATGCAAGAAATATGGTTGCCAATGAACCATTCCATATTGTTTCTAAGTCCAAGAAAACACCTTGGGACTCACCAAGACTTTCTTATGATGGGAGAGATATGCAAGATACATTCAAATCCTCCACAAAGCATAAGGAACTTCCAAGGTTTTCCTTGGACAGCAGAGAAAGATCCATTAGAGGTTTCAATGAAGGAAACAAGGCTCACAACCTGTTGAAGGGTCCCCAGAAAGGGTATGGGAGGAACTCCAACTCAATGCTTAGCCAGCTGCAAGAACCAGAAACTTCAAAAAGATCATCCAGTGTTGTAGCTAAGTTGATGGGTCTAGAAGCCCTCCCAGATGGGACTCAAACTTGTGGGACTCCAATAGGGACTTCTAGTTGCTCCACCAATAAAAATGAACTCTTGGCAAGATCTGGCACAAGTGATGAATCCAAGCAACATCAAAGTTTTGCATCCCTAAGGACATGCCAGGGATTCACCTTGCCTCAATCTAGAAGGGCTGATTCAATCACAAATGTGACACCATATTCACGATTTGCGCTTGAACCAACTCCTTGGAGGCAACCTGATGCAAGCCAAAGTTCTCAATTACAAGCTTCCAAGGGAAGTGAATCTGATGTAAAAGCCTCAAAATCTTCTCTATCTGTATATGGAGAAATTGAAAAAAGGCTGGCAGAACTTGAGTTCAAAAAGTCTGGAAAGGATCTCAGAGCCCTTAAACAGATTCTTGAAGCAATACAAAGACATAAAGATTCATCAGATATTGCAAGAGATCAGGCTTCAAATTCACCATCTGACAATAGGAATAATACTAGTCTCAGGGAAAGCTCAAAAGTACAAAGCCCAAGAACTCGACAAAAGGATCAGGCATCTGTCACAGTTGAGATGTCAAATTCAACCCAGAGTAGTAAATTGCCAATTGTCATCATGAAACCAGCAAAAGTTACTAGAAAGGCCAACAATCCTTCTTCCACAGAATTGTCACTTCATCAAAAATCTGGTTTCAGCAAGTGTTCCCTTAGTAATCCAACAAATGGAAGATTGGTTGACAAGCAAACAGCTAAAGGCATCAGTTCAACAACAAAAAATATCAAAGACCCTTTTGGTCAACCAATTCTTTCATCAGATAAGAATAATAGCATGAGGACTTCAAAATTGATGCAATCCTCAAAAGTTCCTCAAGACAGCAATATAACAGTGACGGGTAGCCCAAGACTACAAAAGAAGTTTGGTTTGGAGAGGCGTTCTCCACCAACTAGCCCATCATCAGATTCCAGCATTAACCGAAGACAGCATCATAATAGGCAACCTGTGGAATTGTCTTCCCCAAGTACAACACCAAGACAAAATTTCTCTACTTTGCAGGAAAGAAATGAACGTTTTGGTGAGATCAGTTGTCACTGGAGGGATTTTAAACATCATGTTAATATCATTTCTCCAGATTTTGACAACAAAAGAAGCTCAGCCACTCAAAGTGACATAGAAGTCATTCGCATTGGTCAATCAGGAAATATCAACAGCACCTCAATCCAACTGAGGGGCATGAATCAAAATATTGCATTTGAAGAGCTGAGGAAGGAAAGTTCTAAGGCTGAGACAATAGTAACTGCAGAACAACCAAGTCCTGTGTCTGTTCTTGATACTTCATTCTATAGGGAAGACCCACCATCTCCAGTGAAAAAGAAATCAGACATCTCAAAAAATTTAGGTGAAACTCTAAGCACTGATGAAGATAATGAGGAGAACTCGGTGGATCTTTCTCCTTTATCCAGCACCACAAAAGCCAACTTAAGCAATGGATCTTGTGATAGAGACTTGAACACCCATAATCTGGTTCAAATACTCCAAGAAATAGACTGGAATGATGAGAAATTCATCAATTTCTATCACAGCAAGGATCCTGACCATAAGTATATATCAGAAATACTGTTAGCATCAGGTCTGCTCAATGGTAACAGCTCTAGCCAGATACTTCATTCACCAGGTCACTTGATTAATCCAAAGTTGTTCTTTGCGCTTGAACAAATGAAGACAAATAAAGGGCATTTCAATACTGAAGAAAGTGTCAAGAAAATTGCCAGCATTATTAATCCTGAGCAAATGCAAAGAAAACTCATATTTGATGTTGTTAATGACATTTTAGTTCAAAAACTGATATTGGAGAGTTCTTCCTCTCTGCGGTGCTCACCAAATGAGCTAGCAGGCAGAAAACTAAAAGGGCAGCAGCTTTATGATGAGCTATGTACAGAAATAGATCAGTTACAACCTCAAAATAGGAATGTCAACCGAGTTCATCAGGATGAGAATTTGACAAGTCTCTTGTGTGGAGATTTGAAACATTATCACACTATTGGGACTAAATGCTGCAGTGAGGTACCAAATATTGTGTTGGATATTGAACGGTTGATCTTTAAAGATTTGATAACTGAAGTTGTGAAAGGTGAAGCAGCAAACCATTTTGGTAGACATTGCAGGCAACTGCTGTTTCCCAAGTAG 3072 0.3978 MSGKGLKSLKDENPDLQKQIGCITGFFQLFDRHRFLTGQHTSGYIQHRTNSGGSNNDIKKLNSTMQKTKAKNVKIAREKQQFSRESSITSVSSSSCSSSMSSHEFNRTIQTESPSTSQIRIPQNSHSEVAMKQRDTPCHQSLDFYDIVKDSMHREAQGLSVKTVAKEGKKGQPHHTLKHIDSPRPLLSNTVNARNMVANEPFHIVSKSKKTPWDSPRLSYDGRDMQDTFKSSTKHKELPRFSLDSRERSIRGFNEGNKAHNLLKGPQKGYGRNSNSMLSQLQEPETSKRSSSVVAKLMGLEALPDGTQTCGTPIGTSSCSTNKNELLARSGTSDESKQHQSFASLRTCQGFTLPQSRRADSITNVTPYSRFALEPTPWRQPDASQSSQLQASKGSESDVKASKSSLSVYGEIEKRLAELEFKKSGKDLRALKQILEAIQRHKDSSDIARDQASNSPSDNRNNTSLRESSKVQSPRTRQKDQASVTVEMSNSTQSSKLPIVIMKPAKVTRKANNPSSTELSLHQKSGFSKCSLSNPTNGRLVDKQTAKGISSTTKNIKDPFGQPILSSDKNNSMRTSKLMQSSKVPQDSNITVTGSPRLQKKFGLERRSPPTSPSSDSSINRRQHHNRQPVELSSPSTTPRQNFSTLQERNERFGEISCHWRDFKHHVNIISPDFDNKRSSATQSDIEVIRIGQSGNINSTSIQLRGMNQNIAFEELRKESSKAETIVTAEQPSPVSVLDTSFYREDPPSPVKKKSDISKNLGETLSTDEDNEENSVDLSPLSSTTKANLSNGSCDRDLNTHNLVQILQEIDWNDEKFINFYHSKDPDHKYISEILLASGLLNGNSSSQILHSPGHLINPKLFFALEQMKTNKGHFNTEESVKKIASIINPEQMQRKLIFDVVNDILVQKLILESSSSLRCSPNELAGRKLKGQQLYDELCTEIDQLQPQNRNVNRVHQDENLTSLLCGDLKHYHTIGTKCCSEVPNIVLDIERLIFKDLITEVVKGEAANHFGRHCRQLLFPK* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00540 1023 MobiDBLite consensus disorder prediction 548 596 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 776 791 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 441 497 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 70 101 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 268 291 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 738 791 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 82 101 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 379 404 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 449 497 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 506 525 - -
Rops8g00540 1023 Coils Coil 58 85 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 168 187 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 548 647 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 629 647 - -
Rops8g00540 1023 Pfam Domain of unknown function (DUF4378) 827 1002 IPR025486 -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 746 766 - -
Rops8g00540 1023 PANTHER LONGIFOLIA PROTEIN 1 1019 IPR033334 GO:0051513
Rops8g00540 1023 MobiDBLite consensus disorder prediction 252 291 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 372 404 - -
Rops8g00540 1023 MobiDBLite consensus disorder prediction 509 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00540 Rops-Chr8 11279972 11285798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00540 139 1009 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 32.973 7.89e-92 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00540 - - gmx:100808151 1405.19