Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00534 ATGATTACTATGGGGTCATCGTCCAACCGTCGTTCTGCCGATAATTTCCCCTTGAAAATTGAAGTCACAAATGATCTTAAAAATTTGCATGGACTGGTGCCATGGTTGTTCACGTCTCAATACAGAAAGTATATTGGACGATGTGCTTCAGTTTTGACTTTTGATGGAGATGTCTTCGAAGTTCGTTTCCTCCAAGGAGTGAACTGTGGAAAGTTCACCAATGGTTGGAAATCATTTCTTCATGCCTGTAATATGGAGGAAAAGAATCAGGTGATTTTGAACTACCATGGAGGATCCTCTTTTACCTTCATTGTACACGACCAACAAGGTGTCAATGAAGTCCCGATTTCTGCTCATGAAACCAATCTCCAAGAAGTCTCTCATAATTCTCACTCTGATAATGGCGTCATGTTTCCTCAAATTACCTTGACCGACATAAAGTACATCAAAGCAAACCATCCGTCTAACTTAAGATTGAAAAATGTCATCCTGGAGGTGGAAGGTGGGAGAAGTTGGAAATGTGGTTTATACAGAAACGAGTCAAGACCCAGGGAAGCTAGATTGAGTTCTGGGTGGAAAGATTTCTGTTTTGATCTTAAATTCAAGCCAGGAGACCATATAACTTTCAAAGTTCAAGAGCAATGGAAGAATCGTTTTTTCGTTCATATTGACCGTGTCTGA 681 0.4023 MITMGSSSNRRSADNFPLKIEVTNDLKNLHGLVPWLFTSQYRKYIGRCASVLTFDGDVFEVRFLQGVNCGKFTNGWKSFLHACNMEEKNQVILNYHGGSSFTFIVHDQQGVNEVPISAHETNLQEVSHNSHSDNGVMFPQITLTDIKYIKANHPSNLRLKNVILEVEGGRSWKCGLYRNESRPREARLSSGWKDFCFDLKFKPGDHITFKVQEQWKNRFFVHIDRV* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00534 226 Gene3D - 125 226 IPR015300 -
Rops8g00534 226 ProSiteProfiles B3 DNA-binding domain profile. 162 226 IPR003340 GO:0003677
Rops8g00534 226 SUPERFAMILY DNA-binding pseudobarrel domain 32 111 IPR015300 -
Rops8g00534 226 Pfam B3 DNA binding domain 128 223 IPR003340 GO:0003677
Rops8g00534 226 Gene3D - 15 110 IPR015300 -
Rops8g00534 226 SUPERFAMILY DNA-binding pseudobarrel domain 160 225 IPR015300 -
Rops8g00534 226 CDD B3_DNA 147 225 IPR003340 GO:0003677
Rops8g00534 226 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 55 214 IPR039218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00534 Rops-Chr8 10892137 10894019 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g00534 B3 7.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00534 - - sbi:8062498 54.299