Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00508 ATGGCAACACGAGGATTTGGGTATACTTTTGAAGGGCCACAGGTCATGGCAGTTTCAAGGACTGTGAAGGATGTTTCTCCTCACGAGTTCGTCAACACTTATGCCTCTCACCTCAAGCGTTCTGGCAAGATGGAGTTTCCTGAATGGACGGATATTGTAAAACAACAAAATTTAAAGAATTGCCTCCCTATGATCCTGACTAGTATTATGGCAAGAAAGATCTATTTGAGAGGTGGTCTTGGCGTTGGTGCTTTTCAGAGGATCTATGGTGGAAGCAAGAGGAATGGAAGCCGCCCTCCACACTTCCGCAAGAGCAGTGGTGCTATTGCCAGAAACATCCTGCAACAGTAG 351 0.4615 MATRGFGYTFEGPQVMAVSRTVKDVSPHEFVNTYASHLKRSGKMEFPEWTDIVKQQNLKNCLPMILTSIMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFRKSSGAIARNILQQ* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00508 116 FunFam 40S ribosomal protein S19 17 116 - -
Rops8g00508 116 SMART Ribosomal_S19e_2 21 116 IPR001266 GO:0003735|GO:0005840|GO:0006412
Rops8g00508 116 Gene3D - 9 116 IPR036388 -
Rops8g00508 116 PANTHER 40S RIBOSOMAL PROTEIN S19 14 116 IPR001266 GO:0003735|GO:0005840|GO:0006412
Rops8g00508 116 Pfam Ribosomal protein S19e 21 116 IPR001266 GO:0003735|GO:0005840|GO:0006412
Rops8g00508 116 SUPERFAMILY "Winged helix" DNA-binding domain 21 116 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00508 Rops-Chr8 9742227 9742577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00508 16 116 Cytoplasmic Ribosomal Protein Gene Family AT5G15520 71.963 6.96e-50 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00508 K02966 - gmx:100527647 158.303