Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00489 ATGACTGGTCCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAGTGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGTCATGATCAATTATATACCCATTTTCCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCACATCTCCCTGTGAGTGATCGTTATGAAGCTGCACTTACTATCTCATATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTTGCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTAGTTTATCTCAGGGAACAAGCAGCTCAGAGATGTTTTAATGCCTCAGCTGCTGAAAACCCTAATGAGAATATAATGGGTCCTCAATTTTTTTCACCAAACTTGATCATTAATCCCTCAACATTACAATATTATGGGAATATTACTCCCATGGACCCAAACCCTGTTGGAAATTATGAAAATTCAGGAACCATGGAAGAGAGCATCTCATTTTCTAGATTTGAAGAGAGTTGTGACATGCAAAGGCAGTGGTCCTTTCATGAAGTGTATAACCTTCAGCTCCGAGCTGGGGAGATTATTGATCCGGTTCTTGCAGGAAAAATTGCACCAGAGTGTTTGGAATTATATATAGATACCATAGACCGTTGCATGAAGTTTGAACCAAATGAACGACCAGCAATTGGCGAAGTAGAGGTGGAACTTGAGCATGCTCTGACTTTGCAACAGGAAGCAGATGCAAGGAACACTGGTGGTGATTATAGCTTATTATTCCCCAGCATTACTCATTCTAAACAAGAGGACGCACCAATTTCAGCCTAG 840 0.4155 MTGPGSPCGACKFLRRKCVRGCVFAPYFCHDQLYTHFPAIHKVFGASNVSKLLAHLPVSDRYEAALTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLVYLREQAAQRCFNASAAENPNENIMGPQFFSPNLIINPSTLQYYGNITPMDPNPVGNYENSGTMEESISFSRFEESCDMQRQWSFHEVYNLQLRAGEIIDPVLAGKIAPECLELYIDTIDRCMKFEPNERPAIGEVEVELEHALTLQQEADARNTGGDYSLLFPSITHSKQEDAPISA* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00489 279 Coils Coil 87 107 - -
Rops8g00489 279 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Rops8g00489 279 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Rops8g00489 279 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 121 - -
Rops8g00489 279 Gene3D Transferase(Phosphotransferase) domain 1 167 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00489 Rops-Chr8 9057802 9064068 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00489 7 122 AS2 family AT3G58190 77.119 8.43e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops8g00489 LOB 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00489 K13945 K13944 gmx:100816960 277.33