Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00480 ATGGTTCTCAAGTATTTGGGTTTCTGCCGTTCAAAGCATACAAGTTCAGCTCAGAGGAACTATCCAACAGTAATAGGAGAGCTATGCCGTCGATTTTCTCTGGCAGATATTAGGAAATCAACCAACAACTTTGATGAAAATCGAATACTTGGACGTGGAGACATTGGTACAGTATATAAAGGTTGTCTACAACACAATGGTAGGGGTGATTATGCAGTTGCAATCAAGCGAATTTGTACATGCACTGACAAAGAATTGAAAGAGTTCAAGAAAGAAATTGAGTTGCTTTGCCAACTTCATCATCCTAATTTGGTCACTTTAATAGGATTTTGTGACCGCAAAGACGAGAAGATTATTGTGTATGAGTACATGGCCAATGGAGGTCTCTATGATTGCCTATATGGTATAACAAAGAAACCACTTTCATGGAAGCTAAGGTTAAAGATCTGCATAGGAAGGAACAGCACGTGGACTACACTTCCTTCATACAGGAGCCAAGCGCACTATTTTCCATCGTGA 519 0.3988 MVLKYLGFCRSKHTSSAQRNYPTVIGELCRRFSLADIRKSTNNFDENRILGRGDIGTVYKGCLQHNGRGDYAVAIKRICTCTDKELKEFKKEIELLCQLHHPNLVTLIGFCDRKDEKIIVYEYMANGGLYDCLYGITKKPLSWKLRLKICIGRNSTWTTLPSYRSQAHYFPS* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00480 172 Gene3D Phosphorylase Kinase; domain 1 4 123 - -
Rops8g00480 172 SUPERFAMILY Protein kinase-like (PK-like) 20 151 IPR011009 -
Rops8g00480 172 SMART tyrkin_6 44 172 IPR020635 GO:0004713|GO:0006468
Rops8g00480 172 ProSiteProfiles Protein kinase domain profile. 44 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00480 172 Pfam Protein tyrosine and serine/threonine kinase 47 151 IPR001245 GO:0004672|GO:0006468
Rops8g00480 172 PANTHER OS07G0166700 PROTEIN 29 152 IPR045272 GO:0004714|GO:0006468
Rops8g00480 172 FunFam Receptor-like protein kinase ANXUR2 7 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00480 Rops-Chr8 8929308 8931293 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00480 8 152 Receptor kinase-like Gene Family AT5G39000 43.333 4.27e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Rops8g00480 PK_Tyr_Ser-Thr 2.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00480 - - ccaj:114915317 204.912