Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00472 ATGGTTCTTCAATGTTTGGGTTTGTGCCATTCAAAGCATATCGAGTCTGGGTTCCCGTCATCTGGTCCAACAGTGATAGAAGAACTATGCCATCATTTTTCTCTGGCTGATCTTAGGAAATCAACCAACAACTTTGATCAAAATCGAATAATTGGAGAGGGAGGCTTTAATACAGTATACAAAGGTTGTCTCCAGCATAATGTTGCCACAGATTGTACAGTTGCGGTGAAGCGAATGAAGGGTCAAAGTGTATGGAGATTGGAAGAGTTCAAGAATGAAATTGAGTTTCTCTGTCAGCTTCGTCACCCTAATTTGGTCTCTCTTATAGGATTCTGCAACCAAAAAGATGAGAATGTTATTGTGTACGAATACATGTCCGATGGATCTCTCCATGATCATTTACACAATAGGCAGATGGAACCACTCTCATGGAAGAAAAGGCTAGAGATCTGCATAGGAGCAGCACGTGGGGTGCACTACCTCCACACAGGAGCTAAGCGCACCATCATTCACCGTGACATCAAACCCTCTAACATTCTCAGGTTTCGGGCTTTGCTTGCAGGGACCATTGTTTACATCAAAGCCAAAACCTATAGAAATAGACAGAATTATAGCTTGACAGATAGAAGTGACGTTTATTCCTTTGGCGTGGTTCTAATTGAAGTGATATGTGCAAAGTCATATACAGAAATTTCAAGGGAGATGATCGAGTTTCAAAAAGAAGAATTAGAAACGACTGTTGGTTCGGAGATGAGCGAGCTTCCAAGAGAAGAATTTGAAAAGCCTATTTGTTCGGAGATGAGCCGGCTTCCAAGTGAAGAATTTGAAAAGCCTATTCGTTCTGCTGATACGCATATGTCTCACGTTATACTAAGCCTCCGAGCTTGGGAGATTATTGATCCAATTCTTGCAGGAAAAATTGCACCAAAGTGTTTGGAATTATATATAGATATCATAGACAGGTGCGTGAAGTATGAACCAAATGAGCGATCAGTAATGGGCGAAGTAGAGGTGGAACTTGAACATGCTCTGACTTTGCAACAGGATGCAGATGCAAGGAACACTGGTGGTGATTATAGCTTATTATCCCCCAGCATTACTCAACCTTAA 1110 0.4153 MVLQCLGLCHSKHIESGFPSSGPTVIEELCHHFSLADLRKSTNNFDQNRIIGEGGFNTVYKGCLQHNVATDCTVAVKRMKGQSVWRLEEFKNEIEFLCQLRHPNLVSLIGFCNQKDENVIVYEYMSDGSLHDHLHNRQMEPLSWKKRLEICIGAARGVHYLHTGAKRTIIHRDIKPSNILRFRALLAGTIVYIKAKTYRNRQNYSLTDRSDVYSFGVVLIEVICAKSYTEISREMIEFQKEELETTVGSEMSELPREEFEKPICSEMSRLPSEEFEKPIRSADTHMSHVILSLRAWEIIDPILAGKIAPKCLELYIDIIDRCVKYEPNERSVMGEVEVELEHALTLQQDADARNTGGDYSLLSPSITQP* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00472 369 SUPERFAMILY Protein kinase-like (PK-like) 19 338 IPR011009 -
Rops8g00472 369 SMART serkin_6 45 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00472 369 Pfam Protein tyrosine and serine/threonine kinase 48 180 IPR001245 GO:0004672|GO:0006468
Rops8g00472 369 FunFam Receptor-like protein kinase ANXUR2 9 124 - -
Rops8g00472 369 ProSiteProfiles Protein kinase domain profile. 45 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00472 369 PANTHER OS07G0166700 PROTEIN 30 347 IPR045272 GO:0004714|GO:0006468
Rops8g00472 369 Gene3D Phosphorylase Kinase; domain 1 12 124 - -
Rops8g00472 369 Gene3D Transferase(Phosphotransferase) domain 1 125 183 - -
Rops8g00472 369 Gene3D Transferase(Phosphotransferase) domain 1 184 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00472 Rops-Chr8 8835891 8837118 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00472 29 356 Receptor kinase-like Gene Family AT3G51550 36.932 3.56e-66 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Rops8g00472 PK_Tyr_Ser-Thr 9.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00472 - - lja:Lj0g3v0196439.1 317.005