Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00459 ATGGTTCTCAAATGTTTGGGTTTGTGCCGTTCAAAGCATATCAAGTCTGAGTTCCCATCATCTGGTCCAACAGTAATAGAAGAGCTATGCCATCATTTTTCTCTGGCTGATCTTAGGAAATCAACCAACAACTTTGATGAAAATCGAATAATTGGAGAGGAAGTCTCTGGTACAGTATACAAAGGTTGTCTCCAGCATAACGTTGCCACAGATTGTACAGTCGCGGTGAAGCGAATGAGGGGTAAAAGTGTATGCGGATTGGAAGTGTTCAAGAATGAAATTGAGTTGCTCTGTCAGCTTCGTCACCCTAATTTGGTCTCTCTTATAGGATTCTGCAACCACAAAGATGAGGATGTTATTGTGTACCAATACATGTCCAATGGATCTCTCCATGATCATTTACACAATAGGGAGATGGAACCATTCTCATGGAAGAAAAGGCTAGAGATCTGCATAGGAGCAGCACGTGGGGTGCACTACCTCCACACAGGAGCCAAGCGCACCATCATTCACCGTGACATCAAACCCTCTAACATTCTTTTGGATAGCAATATGGTGTCCAAAATCTCAGATTTTGAGCTTTCCATTCTGGGACAATTGTTTACATCAAAGCCAAAACCTATTATTGAAACAAAAATCGCAGGTACAATAGGTTTCTTAGCTCCAGAGTATGCCATAATGGGCAGATTGACAGATAGAAGTGACGTTTATTCCTTTGGCGCGGTTCTAATTGAAGTGATATGTGCAAAGTCATATACAGAAATTTCAAGGGAGATGGACGAGGAGCTTGCAAGAGAAGAATTAGAAACGCCTATTCGTTCGGATATGAGCGAGCTTCCAAAGGAAGAACCTGAAACGCCTATTCCTTCTGTACTTTACCGAAGGCTCCGAGCTGGGGAGATTATTGATCTGGTTCTTGCAGGAAAAATTGCACCAGAGTGTTTGGAATTATATGTAGATATCATAGACCGCTGCGTGAAGTATGAACCAAATGAGCGACCAGCAATGGGCGAAGTAGAGGTGGAACTTGAACATGCTCTGACTTTGCAACAGGAAGCAGATGCAAGGAACACTGGTGGTAGTGTTACTCGAGGTTGTTTCTCAGCATTTTGTCCAATTATGTGGGCCGGTTTTGAACCTTTCTGTCATGGCATGTACTATGTTTTGAGTACTCCTGGTATTCAGTAG 1188 0.4276 MVLKCLGLCRSKHIKSEFPSSGPTVIEELCHHFSLADLRKSTNNFDENRIIGEEVSGTVYKGCLQHNVATDCTVAVKRMRGKSVCGLEVFKNEIELLCQLRHPNLVSLIGFCNHKDEDVIVYQYMSNGSLHDHLHNREMEPFSWKKRLEICIGAARGVHYLHTGAKRTIIHRDIKPSNILLDSNMVSKISDFELSILGQLFTSKPKPIIETKIAGTIGFLAPEYAIMGRLTDRSDVYSFGAVLIEVICAKSYTEISREMDEELAREELETPIRSDMSELPKEEPETPIPSVLYRRLRAGEIIDLVLAGKIAPECLELYVDIIDRCVKYEPNERPAMGEVEVELEHALTLQQEADARNTGGSVTRGCFSAFCPIMWAGFEPFCHGMYYVLSTPGIQ* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00459 395 Gene3D Transferase(Phosphotransferase) domain 1 125 363 - -
Rops8g00459 395 Pfam Protein tyrosine and serine/threonine kinase 48 341 IPR001245 GO:0004672|GO:0006468
Rops8g00459 395 SUPERFAMILY Protein kinase-like (PK-like) 19 342 IPR011009 -
Rops8g00459 395 PANTHER OS07G0166700 PROTEIN 29 350 IPR045272 GO:0004714|GO:0006468
Rops8g00459 395 ProSiteProfiles Protein kinase domain profile. 45 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00459 395 SMART serkin_6 45 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00459 395 FunFam Receptor-like protein kinase ANXUR2 8 124 - -
Rops8g00459 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Rops8g00459 395 FunFam Os07g0541700 protein 125 216 - -
Rops8g00459 395 Gene3D Phosphorylase Kinase; domain 1 9 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00459 Rops-Chr8 8679209 8681594 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00459 28 359 Receptor kinase-like Gene Family AT3G51550 41.867 1.32e-78 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Rops8g00459 PK_Tyr_Ser-Thr 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00459 - - gmx:100305395 380.563